Related references
Note: Only part of the references are listed.UniProt: the universal protein knowledgebase in 2021
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2021)
Twelve years of SAMtools and BCFtools
Petr Danecek et al.
GIGASCIENCE (2021)
Sensitive protein alignments at tree-of-life scale using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2021)
Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids
Anzhelika Butenko et al.
BMC BIOLOGY (2020)
MetaEuk-sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics
Eli Levy Karin et al.
MICROBIOME (2020)
Recent advances in trypanosomatid research: genome organization, expression, metabolism, taxonomy and evolution
Dmitri A. Maslov et al.
PARASITOLOGY (2019)
Basalin is an evolutionarily unconstrained protein revealed via a conserved role in flagellum basal plate function
Samuel Dean et al.
ELIFE (2019)
HH-suite3 for fast remote homology detection and deep protein annotation
Martin Steinegger et al.
BMC BIOINFORMATICS (2019)
MMseqs2 desktop and local web server app for fast, interactive sequence searches
Milot Mirdita et al.
BIOINFORMATICS (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Uniclust databases of clustered and deeply annotated protein sequences and alignments
Milot Mirdita et al.
NUCLEIC ACIDS RESEARCH (2017)
EuPathDB: the eukaryotic pathogen genomics database resource
Cristina Aurrecoechea et al.
NUCLEIC ACIDS RESEARCH (2017)
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
Peter Eastman et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program
Vincent Lefort et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Li Song et al.
GIGASCIENCE (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David M. Emms et al.
GENOME BIOLOGY (2015)
lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests
Valerio Mariani et al.
BIOINFORMATICS (2013)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Cell Biology of the Trypanosome Genome
Jan-Peter Daniels et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2010)
TriTrypDB: a functional genomic resource for the Trypanosomatidae
Martin Aslett et al.
NUCLEIC ACIDS RESEARCH (2010)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Gene synteny and evolution of genome architecture in trypanosomatids
E Ghedin et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2004)
Announcing the worldwide Protein Data Bank
H Berman et al.
NATURE STRUCTURAL BIOLOGY (2003)