4.5 Article

Drivers of transcriptional variance in human intestinal epithelial organoids

Related references

Note: Only part of the references are listed.
Article Medicine, General & Internal

Effects of IL-1β, IL-20, and BMP-2 on Intervertebral Disc Inflammation under Hypoxia

Yu-Hsiang Hsu et al.

JOURNAL OF CLINICAL MEDICINE (2020)

Article Gastroenterology & Hepatology

The microbiome modulating activity of bile acids

Yuan Tian et al.

GUT MICROBES (2020)

Article Engineering, Biomedical

Fully synthetic matrices for in vitro culture of primary human intestinal enteroids and endometrial organoids

Victor Hernandez-Gordillo et al.

BIOMATERIALS (2020)

Review Cardiac & Cardiovascular Systems

Ezetimibe and Improving Cardiovascular Outcomes: Current Evidence and Perspectives

Akshyaya Pradhan et al.

CARDIOLOGY RESEARCH AND PRACTICE (2020)

Article Cell Biology

Collagen, stiffness, and adhesion: the evolutionary basis of vertebrate mechanobiology

Vivian W. Tang

MOLECULAR BIOLOGY OF THE CELL (2020)

Article Multidisciplinary Sciences

Human norovirus exhibits strain-specific sensitivity to host interferon pathways in human intestinal enteroids

Shih-Ching Lin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Review Medicine, General & Internal

Disturbances in Cholesterol Homeostasis and Non-alcoholic Fatty Liver Diseases

Pooja Malhotra et al.

FRONTIERS IN MEDICINE (2020)

Article Gastroenterology & Hepatology

Composition of the mucosa-associated microbiota along the entire gastrointestinal tract of human individuals

F. E. R. Vuik et al.

UNITED EUROPEAN GASTROENTEROLOGY JOURNAL (2019)

Article Microbiology

Microbial Metabolic Capacity for Intestinal Folate Production and Modulation of Host Folate Receptors

Melinda A. Engevik et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Biochemical Research Methods

Evaluation of variability in human kidney organoids

Belinda Phipson et al.

NATURE METHODS (2019)

Review Oncology

The broken cycle: E2F dysfunction in cancer

Lindsey N. Kent et al.

NATURE REVIEWS CANCER (2019)

Article Gastroenterology & Hepatology

Human Intestinal Enteroids With Inducible Neurogenin-3 Expression as a Novel Model of Gut Hormone Secretion

Alexandra L. Chang-Graham et al.

CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY (2019)

Article Multidisciplinary Sciences

Development of a primary human Small Intestine-on-a-Chip using biopsy-derived organoids

Magdalena Kasendra et al.

SCIENTIFIC REPORTS (2018)

Article Biochemical Research Methods

iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data

Steven Xijin Ge et al.

BMC BIOINFORMATICS (2018)

Article Immunology

Distinct populations of inflammatory fibroblasts and myofibroblasts in pancreatic cancer

Daniel Ohlund et al.

JOURNAL OF EXPERIMENTAL MEDICINE (2017)

Article Biochemistry & Molecular Biology

Cholesterol auxotrophy and intolerance to ezetimibe in mice with SREBP-2 deficiency in the intestine

Shunxing Rong et al.

JOURNAL OF LIPID RESEARCH (2017)

Article Multidisciplinary Sciences

Interplay between metabolic identities in the intestinal crypt supports stem cell function

Maria J. Rodriguez-Colman et al.

NATURE (2017)

Article Multidisciplinary Sciences

A paradox of transcriptional and functional innate interferon responses of human intestinal enteroids to enteric virus infection

Kapil Saxena et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Cell & Tissue Engineering

Development and Characterization of a Human and Mouse Intestinal Epithelial Cell Monolayer Platform

Kenji Kozuka et al.

STEM CELL REPORTS (2017)

Article Gastroenterology & Hepatology

Self-renewing Monolayer of Primary Colonic or Rectal Epithelial Cells

Yuli Wang et al.

CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY (2017)

Review Biochemical Research Methods

Bioengineering for intestinal organoid cultures

Ge-Ah Kim et al.

CURRENT OPINION IN BIOTECHNOLOGY (2017)

Review Biochemistry & Molecular Biology

Death in the intestinal epithelium-basic biology and implications for inflammatory bowel disease

J. Magarian Blander

FEBS JOURNAL (2016)

Article Multidisciplinary Sciences

Designer matrices for intestinal stem cell and organoid culture

Nikolce Glorevski et al.

NATURE (2016)

Article Biotechnology & Applied Microbiology

Near-optimal probabilistic RNA-seq quantification

Nicolas L. Bray et al.

NATURE BIOTECHNOLOGY (2016)

Article Multidisciplinary Sciences

Replication of human noroviruses in stem cell-derived human enteroids

Khalil Ettayebi et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

Extracellular matrix stiffness dictates Wnt expression through integrin pathway

Jing Du et al.

SCIENTIFIC REPORTS (2016)

Article Biochemistry & Molecular Biology

Scap is required for sterol synthesis and crypt growth in intestinal mucosa

Matthew R. McFarlane et al.

JOURNAL OF LIPID RESEARCH (2015)

Article Multidisciplinary Sciences

Mechanical induction of the tumorigenic β-catenin pathway by tumour growth pressure

Maria Elena Fernandez-Sanchez et al.

NATURE (2015)

Article Multidisciplinary Sciences

Distinct Human Stem Cell Populations in Small and Large Intestine

Julie M. Cramer et al.

PLOS ONE (2015)

Review Oncology

Cancer Cell Lines for Drug Discovery and Development

Jennifer L. Wilding et al.

CANCER RESEARCH (2014)

Article Gastroenterology & Hepatology

Ex vivo culture of the intestinal epithelium: strategies and applications

Marc Leushacke et al.

Review Cell Biology

Adult intestinal stem cells: critical drivers of epithelial homeostasis and regeneration

Nick Barker

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Review Oncology

Stem cell dynamics in homeostasis and cancer of the intestine

Louis Vermeulen et al.

NATURE REVIEWS CANCER (2014)

Review Physiology

Paneth Cells: Maestros of the Small Intestinal Crypts

Hans C. Clevers et al.

ANNUAL REVIEW OF PHYSIOLOGY, VOL 75 (2013)

Review Cell Biology

FXR signaling in the enterohepatic system

Tsutomu Matsubara et al.

MOLECULAR AND CELLULAR ENDOCRINOLOGY (2013)

Article Multidisciplinary Sciences

Succinate is an inflammatory signal that induces IL-1β through HIF-1α

G. M. Tannahill et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

A functional CFTR assay using primary cystic fibrosis intestinal organoids

Johanna F. Dekkers et al.

NATURE MEDICINE (2013)

Article Biochemical Research Methods

In vitro expansion and genetic modification of gastrointestinal stem cells in spheroid culture

Hiroyuki Miyoshi et al.

NATURE PROTOCOLS (2013)

Article Biochemistry & Molecular Biology

Functional engraftment of colon epithelium expanded in vitro from a single adult Lgr5+ stem cell

Shiro Yui et al.

NATURE MEDICINE (2012)

Article Gastroenterology & Hepatology

Bile Acid Is a Host Factor That Regulates the Composition of the Cecal Microbiota in Rats

K. B. M. Saiful Islam et al.

GASTROENTEROLOGY (2011)

Letter Biotechnology & Applied Microbiology

Towards a knowledge-based Human Protein Atlas

Mathias Uhlen et al.

NATURE BIOTECHNOLOGY (2010)

Article Biochemical Research Methods

Matrigel: A complex protein mixture required for optimal growth of cell culture

Chris S. Hughes et al.

PROTEOMICS (2010)

Review Gastroenterology & Hepatology

Establishment of conditionally immortalized epithelial cell lines from the intestinal tissue of adult normal and transgenic mice

Robert H. Whitehead et al.

AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2009)

Review Physiology

Stem Cells, Self-Renewal, and Differentiation in the Intestinal Epithelium

Laurens G. van der Flier et al.

ANNUAL REVIEW OF PHYSIOLOGY (2009)

Article Biochemistry & Molecular Biology

Collagen IV regulates Caco-2 cell spreading and p130(Cas) phosphorylation by FAK-dependent and FAK-independent pathways

Matthew A. Sanders et al.

BIOLOGICAL CHEMISTRY (2008)

Article Cell Biology

The microenvironmental determinants for kidney epithelial cyst morphogenesis

Qiusha Guo et al.

EUROPEAN JOURNAL OF CELL BIOLOGY (2008)

Review Gastroenterology & Hepatology

Current view: Intestinal stem cells and signaling

David H. Scoville et al.

GASTROENTEROLOGY (2008)

Review Cell Biology

The intestinal stem cell

Nick Barker et al.

GENES & DEVELOPMENT (2008)

Article Cell Biology

Map of differential transcript expression in the normal human large intestine

Lawrence C. LaPointe et al.

PHYSIOLOGICAL GENOMICS (2008)

Article Gastroenterology & Hepatology

Expression of nonclassical class I molecules by intestinal epithelial cells

Lilani Perera et al.

INFLAMMATORY BOWEL DISEASES (2007)

Review Biochemistry & Molecular Biology

Bile salt biotransformations by human intestinal bacteria

JM Ridlon et al.

JOURNAL OF LIPID RESEARCH (2006)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Oncology

Matrigel: Basement membrane matrix with biological activity

HK Kleinman et al.

SEMINARS IN CANCER BIOLOGY (2005)

Article Cell Biology

Regional variations in ABC transporter expression along the mouse intestinal tract

DM Mutch et al.

PHYSIOLOGICAL GENOMICS (2004)