Related references
Note: Only part of the references are listed.STAT3: A key regulator in liver fibrosis
Jie Zhao et al.
ANNALS OF HEPATOLOGY (2021)
WikiPathways: connecting communities
Marvin Martens et al.
NUCLEIC ACIDS RESEARCH (2021)
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
Stephen K. Burley et al.
NUCLEIC ACIDS RESEARCH (2021)
The Gene Ontology resource: enriching a GOld mine
Seth Carbon et al.
NUCLEIC ACIDS RESEARCH (2021)
A roadmap for the Human Developmental Cell Atlas
Muzlifah Haniffa et al.
NATURE (2021)
miRDB: an online database for prediction of functional microRNA targets
Yuhao Chen et al.
NUCLEIC ACIDS RESEARCH (2020)
NetCore: a network propagation approach using node coreness
Gal Barel et al.
NUCLEIC ACIDS RESEARCH (2020)
Network integration and modelling of dynamic drug responses at multi-omics levels
Nathalie Selevsek et al.
COMMUNICATIONS BIOLOGY (2020)
The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling
Sarah Mubeen et al.
FRONTIERS IN GENETICS (2019)
MatrixDB: integration of new data with a focus on glycosaminoglycan interactions
Olivier Clerc et al.
NUCLEIC ACIDS RESEARCH (2019)
CORUM: the comprehensive resource of mammalian protein complexes2019
Madalina Giurgiu et al.
NUCLEIC ACIDS RESEARCH (2019)
ChEMBL: towards direct deposition of bioassay data
David Mendez et al.
NUCLEIC ACIDS RESEARCH (2019)
The BioCyc collection of microbial genomes and metabolic pathways
Peter D. Karp et al.
BRIEFINGS IN BIOINFORMATICS (2019)
The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens
Dimitra Repana et al.
GENOME BIOLOGY (2019)
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
Heonjong Han et al.
NUCLEIC ACIDS RESEARCH (2018)
An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
Jianfang Liu et al.
CELL (2018)
A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples
Han Chen et al.
CELL (2018)
MiR-1-3p that correlates with left ventricular function of HCM can serve as a potential target and differentiate HCM from DCM
Mengmeng Li et al.
JOURNAL OF TRANSLATIONAL MEDICINE (2018)
Systematic Evaluation of Molecular Networks for Discovery of Disease Genes
Justin K. Huang et al.
CELL SYSTEMS (2018)
KEGG: new perspectives on genomes, pathways, diseases and drugs
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2017)
Circulating miR-1 as a potential biomarker of doxorubicin-induced cardiotoxicity in breast cancer patients
Vagner Oliveira-Carvalho Rigaud et al.
ONCOTARGET (2017)
Network propagation: a universal amplifier of genetic associations
Lenore Cowen et al.
NATURE REVIEWS GENETICS (2017)
Understanding Tissue-Specific Gene Regulation
Abhijeet Rajendra Sonawane et al.
CELL REPORTS (2017)
Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer
Justin M. Drake et al.
CELL (2016)
Analyzing and interpreting genome data at the network level with ConsensusPathDB
Ralf Herwig et al.
NATURE PROTOCOLS (2016)
The H-index of a network node and its relation to degree and coreness
Linyuan Lue et al.
NATURE COMMUNICATIONS (2016)
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins
Andrew D. Rouillard et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
Convergence of Developmental and Oncogenic Signaling Pathways at Transcriptional Super-Enhancers
Denes Hnisz et al.
MOLECULAR CELL (2015)
Fundamentals of protein interaction network mapping
Jamie Snider et al.
MOLECULAR SYSTEMS BIOLOGY (2015)
Predicting effective microRNA target sites in mammalian mRNAs
Vikram Agarwal et al.
ELIFE (2015)
Correcting for the study bias associated with protein-protein interaction measurements reveals differences between protein degree distributions from different cancer types
Martin H. Schaefer et al.
FRONTIERS IN GENETICS (2015)
Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes
Mark D. M. Leiserson et al.
NATURE GENETICS (2015)
PhosphoSitePlus, 2014: mutations, PTMs and recalibrations
Peter V. Hornbeck et al.
NUCLEIC ACIDS RESEARCH (2015)
Mitochondrial form and function
Jonathan R. Friedman et al.
NATURE (2014)
The MIntAct project-IntAct as a common curation platform for 11 molecular interaction databases
Sandra Orchard et al.
NUCLEIC ACIDS RESEARCH (2014)
SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database
Timothy Jewison et al.
NUCLEIC ACIDS RESEARCH (2014)
SignaLink 2-a signaling pathway resource with multi-layered regulatory networks
David Fazekas et al.
BMC SYSTEMS BIOLOGY (2013)
Temporal mapping of CEBPA and CEBPB binding during liver regeneration reveals dynamic occupancy and specific regulatory codes for homeostatic and cell cycle gene batteries
Janus Schou Jakobsen et al.
GENOME RESEARCH (2013)
The Genotype-Tissue Expression (GTEx) project
John Lonsdale et al.
NATURE GENETICS (2013)
InnateDB: systems biology of innate immunity and beyond-recent updates and continuing curation
Karin Breuer et al.
NUCLEIC ACIDS RESEARCH (2013)
The ConsensusPathDB interaction database: 2013 update
Atanas Kamburov et al.
NUCLEIC ACIDS RESEARCH (2013)
Pharmacogenomics Knowledge for Personalized Medicine
M. Whirl-Carrillo et al.
CLINICAL PHARMACOLOGY & THERAPEUTICS (2012)
MINT, the molecular interaction database: 2012 update
Luana Licata et al.
NUCLEIC ACIDS RESEARCH (2012)
IntScore: a web tool for confidence scoring of biological interactions
Atanas Kamburov et al.
NUCLEIC ACIDS RESEARCH (2012)
SPIKE: a database of highly curated human signaling pathways
Arnon Paz et al.
NUCLEIC ACIDS RESEARCH (2011)
ConsensusPathDB: toward a more complete picture of cell biology
Atanas Kamburov et al.
NUCLEIC ACIDS RESEARCH (2011)
INOH: ontology-based highly structured database of signal transduction pathways
Satoko Yamamoto et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2011)
NetPath: a public resource of curated signal transduction pathways
Kumaran Kandasamy et al.
GENOME BIOLOGY (2010)
PID: the Pathway Interaction Database
Carl F. Schaefer et al.
NUCLEIC ACIDS RESEARCH (2009)
PIG-the pathogen interaction gateway
Tim Driscoll et al.
NUCLEIC ACIDS RESEARCH (2009)
Human Protein Reference Database-2009 update
T. S. Keshava Prasad et al.
NUCLEIC ACIDS RESEARCH (2009)
MicroRNA-92a Controls Angiogenesis and Functional Recovery of Ischemic Tissues in Mice
Angelika Bonauer et al.
SCIENCE (2009)
PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database
Chia-Ying Yang et al.
BIOINFORMATICS (2008)
Computing topological parameters of biological networks
Yassen Assenov et al.
BIOINFORMATICS (2008)
The Edinburgh human metabolic network reconstruction and its functional analysis
Hongwu Ma et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Integration of biological networks and gene expression data using Cytoscape
Melissa S. Cline et al.
NATURE PROTOCOLS (2007)
BioGRID: a general repository for interaction datasets
Chris Stark et al.
NUCLEIC ACIDS RESEARCH (2006)
Pathguide: a Pathway Resource List
Gary D. Bader et al.
NUCLEIC ACIDS RESEARCH (2006)
Core transcriptional regulatory circuitry in human hepatocytes
Duncan T. Odom et al.
MOLECULAR SYSTEMS BIOLOGY (2006)
The MIPS mammalian protein-protein interaction database
P Pagel et al.
BIOINFORMATICS (2005)
PDZBase: a protein-protein interaction database for PDZ-domains
T Beuming et al.
BIOINFORMATICS (2005)
Th2-specific chromatin remodeling and enhancer activity in the Th2 cytokine locus control region
PE Fields et al.
IMMUNITY (2004)
PINdb: a database of nuclear protein complexes from human and yeast
PV Luc et al.
BIOINFORMATICS (2004)
The Database of Interacting Proteins: 2004 update
L Salwinski et al.
NUCLEIC ACIDS RESEARCH (2004)
Real-time PCR-based method for the estimation of genome sizes
J Wilhelm et al.
NUCLEIC ACIDS RESEARCH (2003)
BIND: the Biomolecular Interaction Network Database
GD Bader et al.
NUCLEIC ACIDS RESEARCH (2003)