Related references
Note: Only part of the references are listed.Emendation of General Consideration 5 and Rules 18a, 24a and 30 of the International Code of Nomenclature of Prokaryotes to resolve the status of the Cyanobacteria in the prokaryotic nomenclature
Aharon Oren et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2021)
All ANIs are not created equal: implications for prokaryotic species boundaries and integration of ANIs into polyphasic taxonomy
Marike Palmer et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2020)
A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae
Jinshui Zheng et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2020)
Analysis of 1,000+Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria
Anton Hoerdt et al.
FRONTIERS IN MICROBIOLOGY (2020)
List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
Aidan C. Parte et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2020)
Minutes of the International Committee on Systematics of Prokaryotes online discussion on the proposed use of gene sequences as type for naming of prokaryotes, and outcome of vote
Iain C. Sutcliffe et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2020)
Genomic-based taxonomic classification of the family Erythrobacteraceae
Lin Xu et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2020)
Roadmap for naming uncultivated Archaea and Bacteria
Alison E. Murray et al.
NATURE MICROBIOLOGY (2020)
Opinions 100, 101 and 102
David R. Arahal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2020)
Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species
Radhey S. Gupta et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2020)
Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities
David W. Waite et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2020)
International Code of Nomenclature of Prokaryotes Prokaryotic Code (2008 Revision)
Charles T. Parker et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)
BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis
Lorenz Christian Reimer et al.
NUCLEIC ACIDS RESEARCH (2019)
A census-based estimate of Earth's bacterial and archaeal diversity
Stilianos Louca et al.
PLOS BIOLOGY (2019)
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
Jan P. Meier-Kolthoff et al.
NATURE COMMUNICATIONS (2019)
Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes
Marina Garcia-Lopez et al.
FRONTIERS IN MICROBIOLOGY (2019)
Why are so many effectively published names of prokaryotic taxa never validated?
Aharon Oren et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
Jongsik Chun et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
Imen Nouioui et al.
FRONTIERS IN MICROBIOLOGY (2018)
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
Seok-Hwan Yoon et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)
Genome-Based Taxonomic Classification of Bacteroidetes
Richard L. Hahnke et al.
FRONTIERS IN MICROBIOLOGY (2016)
Mash: fast genome and metagenome distance estimation using MinHash
Brian D. Ondov et al.
GENOME BIOLOGY (2016)
Big Data: Astronomical or Genomical?
Zachary D. Stephens et al.
PLOS BIOLOGY (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Highly parallelized inference of large genome-based phylogenies
Jan P. Meier-Kolthoff et al.
CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE (2014)
LPSN-list of prokaryotic names with standing in nomenclature
Aidan C. Parte
NUCLEIC ACIDS RESEARCH (2014)
Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
Jan P. Meier-Kolthoff et al.
STANDARDS IN GENOMIC SCIENCES (2014)
When should a DDH experiment be mandatory in microbial taxonomy?
Jan P. Meier-Kolthoff et al.
ARCHIVES OF MICROBIOLOGY (2013)
Genome sequence-based species delimitation with confidence intervals and improved distance functions
Jan P. Meier-Kolthoff et al.
BMC BIOINFORMATICS (2013)
On the fitness of microbial taxonomy
Javier Tamames et al.
TRENDS IN MICROBIOLOGY (2012)
Notes on the characterization of prokaryote strains for taxonomic purposes
B. J. Tindall et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2010)
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
Alexander F. Auch et al.
STANDARDS IN GENOMIC SCIENCES (2010)
phyloXML: XML for evolutionary biology and comparative genomics
Mira V. Han et al.
BMC BIOINFORMATICS (2009)
TNT, a free program for phylogenetic analysis
Pablo A. Goloboff et al.
CLADISTICS (2008)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)