4.7 Review

Ecology, evolution and spillover of coronaviruses from bats

Related references

Note: Only part of the references are listed.
Article Infectious Diseases

SARS-CoV-2 infection of Chinese hamsters (Cricetulus griseus) reproduces COVID-19 pneumonia in a well-established small animal model

Luca D. Bertzbach et al.

Summary: The Chinese hamster model for SARS-CoV-2 infection has been established, offering a valuable tool for studying disease pathogenesis and testing vaccines and therapies. This model demonstrates strong infection susceptibility, more pronounced clinical symptoms, and is well-suited for related research purposes.

TRANSBOUNDARY AND EMERGING DISEASES (2021)

Article Virology

The Ecology of Nipah Virus in Bangladesh: A Nexus of Land-Use Change and Opportunistic Feeding Behavior in Bats

Clifton D. McKee et al.

Summary: The Nipah virus outbreaks in Bangladesh are linked to climatic conditions, the size and distribution of bat roosts, and land-use changes over the past 300 years. 53% of winter spillover events are associated with winter temperature, impacting bat behavior, physiology, and human risk behaviors. Changes in forest cover suggest a historical shift in bat roosting behavior, leading to conditions favoring viral spillover.

VIRUSES-BASEL (2021)

Article Infectious Diseases

Preliminary report of an outbreak of SARS-CoV-2 in mink and mink farmers associated with community spread, Denmark, June to November 2020

Helle Daugaard Larsen et al.

Summary: During June-November 2020, SARS-CoV-2-infected mink were found in 290 out of 1,147 Danish mink farms. In North Denmark Region, 30% of individuals associated with mink farms tested positive for SARS-CoV-2, and approximately 27% of SARS-CoV-2 strains in the community were linked to mink. Despite measures taken, the virus spread was not effectively controlled, leading to the government ordering the culling of all Danish mink as they pose a potential virus reservoir that challenges pandemic control.

EUROSURVEILLANCE (2021)

Article Virology

Susceptibility of White-Tailed Deer (Odocoileus virginianus) to SARS-CoV-2

Mitchell Palmer et al.

Summary: White-tailed deer are highly susceptible to infection by SARS-CoV-2, shedding infectious virus and transmitting it to other deer upon intranasal inoculation, providing important insights into the potential animal hosts of the virus.

JOURNAL OF VIROLOGY (2021)

Article Multidisciplinary Sciences

Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England

Nicholas G. Davies et al.

Summary: A new variant of SARS-CoV-2 has emerged in England, with a higher reproduction number and potential for large resurgences of COVID-19 cases. Without stringent control measures, it is projected that COVID-19 hospitalizations and deaths in England for the first 6 months of 2021 will exceed those in 2020. The variant has spread globally and exhibited similar transmission increases in Denmark, Switzerland, and the United States.

SCIENCE (2021)

Article Virology

The evolutionary history of ACE2 usage within the coronavirus subgenus Sarbecovirus

H. L. Wells et al.

Summary: A study identified three novel sarbecovirus sequences from Rwanda and Uganda that are phylogenetically intermediate to SARS-CoV-1 and SARS-CoV-2 and unable to utilize human ACE2. The study proposed a recombination scenario to explain the observed ACE2 usage pattern among sarbecoviruses, pointing out the need for increased surveillance for sarbecoviruses in regions like southwestern China and Africa.

VIRUS EVOLUTION (2021)

Article Microbiology

SARS-CoV-2 infection, neuropathogenesis and transmission among deer mice: Implications for spillback to New World rodents

Anna Fagre et al.

Summary: The study found that deer mice are susceptible to SARS-CoV-2 and the virus can persist for a long time in their bodies, with efficient transmission to other deer mice. This suggests the potential for sustained transmission in natural populations of deer mice.

PLOS PATHOGENS (2021)

Article Biochemistry & Molecular Biology

Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses

Hong Zhou et al.

Summary: A study in Yunnan province, China, found the existence of bat coronaviruses related to both SARS-CoV-2 and SARS-CoV, with RpYN06 virus being the closest relative of SARS-CoV-2. Ecological modeling predicted the co-existence of up to 23 Rhinolophus bat species, with the largest hot-spots extending from South Laos and Vietnam to southern China. The study highlights the remarkable diversity of bat coronaviruses at the local scale.
Article Biochemistry & Molecular Biology

Mammals, wildlife trade, and the next global pandemic

K. Nagaraju Shivaprakash et al.

Summary: Most new infectious diseases emerge when pathogens transfer from animals to humans. The risk of carrying zoonotic diseases is not equal for all mammal species in wildlife trade, and mitigation measures should prioritize species with the highest risk of carrying zoonotic viruses. Curbing the sales of wildlife products and developing principles that support sustainable and healthy wildlife trade could help prevent future zoonotic outbreaks.

CURRENT BIOLOGY (2021)

Review Virology

From Protein to Pandemic: The Transdisciplinary Approach Needed to Prevent Spillover and the Next Pandemic

Raina K. Plowright et al.

Summary: Pandemics result from processes ranging from viral biology at the nanometer scale to global transmission, involving transmission from reservoir hosts to new species. Prevention of spillover events, through a transdisciplinary approach, is crucial in pandemic prevention by addressing barriers in virus transmission and interspecies contact. Controlling exposure, infection, and disease is important, but preventing spillover events at the source is the ultimate goal for pandemic prevention.

VIRUSES-BASEL (2021)

Article Multidisciplinary Sciences

SARS-CoV-2 infection and transmission in the North American deer mouse

Bryan D. Griffin et al.

Summary: The study demonstrates that North American deer mice are susceptible to SARS-CoV-2 infection and can replicate and transmit the virus without showing significant symptoms.

NATURE COMMUNICATIONS (2021)

Article Multidisciplinary Sciences

Animal sales from Wuhan wet markets immediately prior to the COVID-19 pandemic

Xiao Xiao et al.

Summary: The study documents the sale of 47,381 individuals from 38 species in Wuhan's markets, noting the absence of pangolins and bats which supports the theory that they are not the source of the COVID-19 pandemic. China implemented a temporary ban on wildlife trade and a permanent ban on eating and trading terrestrial wild animals to protect human health, address past inconsistencies, and benefit global biodiversity conservation and animal welfare.

SCIENTIFIC REPORTS (2021)

Article Immunology

Cross-reactive antibodies against human coronaviruses and the animal coronavirome suggest diagnostics for future zoonotic spillovers

Shelley Klompus et al.

Summary: Research shows that antibodies in recovered COVID-19 patients exhibit cross-reactivity with seasonal/common cold human coronaviruses and animal coronaviruses, identifying potential interspecies cross-reactivity. Machine learning using antibody binding data against the entire coronavirus antigen library accurately discriminates infection status, suggesting a diagnostic strategy for future pandemics.

SCIENCE IMMUNOLOGY (2021)

Article Food Science & Technology

Land-use change and the livestock revolution increase the risk of zoonotic coronavirus transmission from rhinolophid bats

Maria Cristina Rulli et al.

Summary: The study suggests that human-livestock-wildlife interactions in China may form hotspots with the potential to increase SARS-related coronavirus transmission from animals to humans. Areas in China populated by horseshoe bats exhibit higher forest fragmentation and concentrations of livestock and humans than other countries.

NATURE FOOD (2021)

Article Environmental Sciences

Land use-induced spillover: a call to action to safeguard environmental, animal, and human health

Raina K. Plowright et al.

Summary: The article emphasizes the importance of interdisciplinary collaborations to enhance our understanding of zoonotic disease outbreaks, particularly focusing on the impact of land use on disease transmission. It highlights the importance of protecting landscape immunity as a crucial measure for disease prevention.

LANCET PLANETARY HEALTH (2021)

Article Virology

The evolutionary history of ACE2 usage within the coronavirus subgenus Sarbecovirus

H. L. Wells et al.

Summary: The study introduced a novel sarbecovirus from Rwanda and Uganda, which is phylogenetically intermediate to SARS-CoV-1 and SARS-CoV-2 and is unable to utilize human ACE2. The findings suggest that the observed pattern of ACE2 usage among sarbecoviruses is best explained by recombination of SARS-CoV-1 and its relatives, shedding light on the natural history of ACE2 usage for both SARS-CoV-1 and SARS-CoV-2.

VIRUS EVOLUTION (2021)

Article Multidisciplinary Sciences

Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans

Bas B. Oude Munnink et al.

Summary: Animal experiments have shown that various animals can be infected by SARS-CoV-2, with evidence of animal-to-human transmission within mink farms. Investigation into mink farm outbreaks revealed that the virus was initially introduced by humans and has since evolved, causing transmission between mink farms. Despite enhanced biosecurity measures and culling, transmission occurred between farms in three large clusters with unknown modes of transmission, resulting in a high percentage of infections among mink farm residents and employees.

SCIENCE (2021)

Article Multidisciplinary Sciences

A pneumonia outbreak associated with a new coronavirus of probable bat origin

Peng Zhou et al.

NATURE (2020)

Article Biochemistry & Molecular Biology

SARS-CoV-2 Reverse Genetics Reveals a Variable Infection Gradient in the Respiratory Tract

Yixuan J. Hou et al.

Review Immunology

Delayed recognition of Ebola virus disease is associated with longer and larger outbreaks

M. Jeremiah Matson et al.

EMERGING MICROBES & INFECTIONS (2020)

Article Multidisciplinary Sciences

Detection of novel coronaviruses in bats in Myanmar

Marc T. Valitutto et al.

PLOS ONE (2020)

Article Multidisciplinary Sciences

Bat coronavirus phylogeography in the Western Indian Ocean

Lea Joffrin et al.

SCIENTIFIC REPORTS (2020)

Article Multidisciplinary Sciences

Pathogenesis and transmission of SARS-CoV-2 in golden hamsters

Sin Fun Sia et al.

NATURE (2020)

Article Multidisciplinary Sciences

Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins

Tommy Tsan-Yuk Lam et al.

NATURE (2020)

Article Multidisciplinary Sciences

Respiratory disease in rhesus macaques inoculated with SARS-CoV-2

Vincent J. Munster et al.

NATURE (2020)

Letter Medicine, General & Internal

Transmission of SARS-CoV-2 in Domestic Cats

Peter J. Halfmann et al.

NEW ENGLAND JOURNAL OF MEDICINE (2020)

Review Biochemistry & Molecular Biology

Extrapulmonary manifestations of COVID-19

Aakriti Gupta et al.

NATURE MEDICINE (2020)

Review Microbiology

Bat-borne virus diversity, spillover and emergence

Michael Letko et al.

NATURE REVIEWS MICROBIOLOGY (2020)

Article Multidisciplinary Sciences

Syrian hamsters as a small animal model for SARS-CoV-2 infection and countermeasure development

Masaki Imai et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

Joana Damas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

Origin and cross-species transmission of bat coronaviruses in China

Alice Latinne et al.

NATURE COMMUNICATIONS (2020)

Article Biochemistry & Molecular Biology

The SARS-CoV-2 Spike protein has a broad tropism for mammalian ACE2 proteins

Carina Conceicao et al.

PLOS BIOLOGY (2020)

Letter Medicine, General & Internal

Multiorgan and Renal Tropism of SARS-CoV-2

Victor G. Puelles et al.

NEW ENGLAND JOURNAL OF MEDICINE (2020)

Article Public, Environmental & Occupational Health

Reproduction of East-African bats may guide risk mitigation for coronavirus spillover

Diego Montecino-Latorre et al.

ONE HEALTH OUTLOOK (2020)

Article Infectious Diseases

SARS-CoV-2 in fruit bats, ferrets, pigs, and chickens: an experimental transmission study

Kore Schlottau et al.

LANCET MICROBE (2020)

Article Public, Environmental & Occupational Health

Using healthcare-seeking behaviour to estimate the number of Nipah outbreaks missed by hospital-based surveillance in Bangladesh

Sonia T. Hegde et al.

INTERNATIONAL JOURNAL OF EPIDEMIOLOGY (2019)

Review Ecology

Extreme Competence: Keystone Hosts of Infections

Lynn B. Martin et al.

TRENDS IN ECOLOGY & EVOLUTION (2019)

Review Infectious Diseases

Molecular epidemiology, evolution and phylogeny of SARS coronavirus

Hayes K. H. Luk et al.

INFECTION GENETICS AND EVOLUTION (2019)

Article Infectious Diseases

Estimating undetected Ebola spillovers

Emma E. Glennon et al.

PLOS NEGLECTED TROPICAL DISEASES (2019)

Article Biology

Sampling to elucidate the dynamics of infections in reservoir hosts

Raina K. Plowright et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)

Review Microbiology

Origin and evolution of pathogenic coronaviruses

Jie Cui et al.

NATURE REVIEWS MICROBIOLOGY (2019)

Review Multidisciplinary Sciences

Changing resource landscapes and spillover of henipaviruses

Maureen K. Kessler et al.

ANNALS OF THE NEW YORK ACADEMY OF SCIENCES (2018)

Article Virology

Lysosomal Proteases Are a Determinant of Coronavirus Tropism

Yuan Zheng et al.

JOURNAL OF VIROLOGY (2018)

Article Multidisciplinary Sciences

White-nose syndrome is associated with increased replication of a naturally persisting coronaviruses in bats

Christina M. Davy et al.

SCIENTIFIC REPORTS (2018)

Article Cell Biology

Adaptive Evolution of MERS-CoV to Species Variation in DPP4

Michael Letko et al.

CELL REPORTS (2018)

Article Immunology

Genomic characterization and infectivity of a novel SARS-like coronavirus in Chinese bats

Dan Hu et al.

EMERGING MICROBES & INFECTIONS (2018)

Article Public, Environmental & Occupational Health

Persistent infections support maintenance of a coronavirus in a population of Australian bats (Myotis macropus)

J. Jeong et al.

EPIDEMIOLOGY AND INFECTION (2017)

Article Biotechnology & Applied Microbiology

A persistently infecting coronavirus in hibernating Myotis lucifugus, the North American little brown bat

Sonu Subudhi et al.

JOURNAL OF GENERAL VIROLOGY (2017)

Review Microbiology

Pathways to zoonotic spillover

Raina K. Plowright et al.

NATURE REVIEWS MICROBIOLOGY (2017)

Article Infectious Diseases

Coronavirus infections in horses in Saudi Arabia and Oman

M. G. Hemida et al.

TRANSBOUNDARY AND EMERGING DISEASES (2017)

Review Biochemistry & Molecular Biology

Molecular Evolution of Human Coronavirus Genomes

Diego Forni et al.

TRENDS IN MICROBIOLOGY (2017)

Article Multidisciplinary Sciences

Tissue Distribution of the MERS-Coronavirus Receptor in Bats

W. Widagdo et al.

SCIENTIFIC REPORTS (2017)

Article Veterinary Sciences

Coronavirus and paramyxovirus in bats from Northwest Italy

Francesca Rizzo et al.

BMC VETERINARY RESEARCH (2017)

Article Biodiversity Conservation

A Comparative Analysis of Viral Richness and Viral Sharing in Cave-Roosting Bats

Anna R. Willoughby et al.

DIVERSITY-BASEL (2017)

Article Virology

Global patterns in coronavirus diversity

Simon J. Anthony et al.

VIRUS EVOLUTION (2017)

Article Biochemistry & Molecular Biology

Human Adaptation of Ebola Virus during the West African Outbreak

Richard A. Urbanowicz et al.

Review Biochemistry & Molecular Biology

Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses

Shuo Su et al.

TRENDS IN MICROBIOLOGY (2016)

Article Virology

Hendra virus ecology and transmission

Hume E. Field

CURRENT OPINION IN VIROLOGY (2016)

Review Infectious Diseases

Transmission or Within-Host Dynamics Driving Pulses of Zoonotic Viruses in Reservoir-Host Populations

Raina K. Plowright et al.

PLOS NEGLECTED TROPICAL DISEASES (2016)

Article Multidisciplinary Sciences

Replication and shedding of MERS-CoV in Jamaican fruit bats (Artibeus jamaicensis)

Vincent J. Munster et al.

SCIENTIFIC REPORTS (2016)

Article Virology

Diversity of coronavirus in bats from Eastern Thailand

Supaporn Wacharapluesadee et al.

VIROLOGY JOURNAL (2015)

Review Pharmacology & Pharmacy

Ecology, evolution and classification of bat coronaviruses in the aftermath of SARS

Jan Felix Drexler et al.

ANTIVIRAL RESEARCH (2014)

Article Medicine, General & Internal

Evidence for Camel-to-Human Transmission of MERS Coronavirus

Esam I. Azhar et al.

NEW ENGLAND JOURNAL OF MEDICINE (2014)

Article Multidisciplinary Sciences

Receptor usage and cell entry of bat coronavirus HKU4 provide insight into bat-to-human transmission of MERS coronavirus

Yang Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Public, Environmental & Occupational Health

Molecular Survey of RNA Viruses in Hungarian Bats: Discovering Novel Astroviruses, Coronaviruses, and Caliciviruses

Gabor Kemenesi et al.

VECTOR-BORNE AND ZOONOTIC DISEASES (2014)

Article Virology

A structural view of coronavirus-receptor interactions

Juan Reguera et al.

VIRUS RESEARCH (2014)

Article Mathematical & Computational Biology

DBatVir: the database of bat-associated viruses

Lihong Chen et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2014)

Article Immunology

Evidence of Recombinant Strains of Porcine Epidemic Diarrhea Virus, United States, 2013

Peng-Fei Tian et al.

EMERGING INFECTIOUS DISEASES (2014)

Article Immunology

MERS Coronaviruses in Dromedary Camels, Egypt

Daniel K. W. Chu et al.

EMERGING INFECTIOUS DISEASES (2014)

Article Biotechnology & Applied Microbiology

Coronaviruses in bats from Mexico

S. J. Anthony et al.

JOURNAL OF GENERAL VIROLOGY (2013)

Article Microbiology

A Strategy To Estimate Unknown Viral Diversity in Mammals

Simon J. Anthony et al.

Article Immunology

Human Betacoronavirus 2c EMC/2012-related Viruses in Bats, Ghana and Europe

Augustina Annan et al.

EMERGING INFECTIOUS DISEASES (2013)

Letter Immunology

Group C Betacoronavirus in Bat Guano Fertilizer, Thailand

Supaporn Wacharapluesadee et al.

EMERGING INFECTIOUS DISEASES (2013)

Letter Immunology

Close Relative of Human Middle East Respiratory Syndrome Coronavirus in Bat, South Africa

Ndapewa Laudika Ithete et al.

EMERGING INFECTIOUS DISEASES (2013)

Review Behavioral Sciences

Pregnancy and pregnancy-associated hormones alter immune responses and disease pathogenesis

Dionne P. Robinson et al.

HORMONES AND BEHAVIOR (2012)

Article Biochemistry & Molecular Biology

Mechanisms of Host Receptor Adaptation by Severe Acute Respiratory Syndrome Coronavirus

Kailang Wu et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Article Immunology

Amplification of Emerging Viruses in a Bat Colony

Jan Felix Drexler et al.

EMERGING INFECTIOUS DISEASES (2011)

Review Microbiology

Identifying genetic markers of adaptation for surveillance of viral host jumps

Kim M. Pepin et al.

NATURE REVIEWS MICROBIOLOGY (2010)

Article Immunology

Bat Coronaviruses and Experimental Infection of Bats, the Philippines

Shumpei Watanabe et al.

EMERGING INFECTIOUS DISEASES (2010)

Review Medicine, Research & Experimental

Coronavirus Diversity, Phylogeny and Interspecies Jumping

Patrick C. Y. Woo et al.

EXPERIMENTAL BIOLOGY AND MEDICINE (2009)

Review Biodiversity Conservation

Bats as bushmeat: a global review

Simon Mickleburgh et al.

Review Biology

Decomposing health: tolerance and resistance to parasites in animals

Lars Raberg et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)

Article Multidisciplinary Sciences

Activation of the SARS coronavirus spike protein via sequential proteolytic cleavage at two distinct sites

Sandrine Belouzard et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Review Multidisciplinary Sciences

Epidemic Dynamics at the Human-Animal Interface

James O. Lloyd-Smith et al.

SCIENCE (2009)

Article Immunology

Detection of Novel SARS-like and Other Coronaviruses in Bats from Kenya

Suxiang Tong et al.

EMERGING INFECTIOUS DISEASES (2009)

Article Biotechnology & Applied Microbiology

Genomic characterizations of bat coronaviruses (1A, 1B and HKU8) and evidence for co-infections in Miniopterus bats

D. K. W. Chu et al.

JOURNAL OF GENERAL VIROLOGY (2008)

Article Virology

Novel astroviruses in insectivorous bats

D. K. W. Chu et al.

JOURNAL OF VIROLOGY (2008)

Review Genetics & Heredity

Rates of evolutionary change in viruses: patterns and determinants

Siobain Duffy et al.

NATURE REVIEWS GENETICS (2008)

Article Biology

Reproduction and nutritional stress are risk factors for Hendra virus infection in little red flying foxes (Pteropus scapulatus)

Raina K. Plowright et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)

Article Zoology

Linking immune defenses and life history at the levels of the individual and the species

Ketty A. Lee

INTEGRATIVE AND COMPARATIVE BIOLOGY (2006)

Article Multidisciplinary Sciences

Superspreading and the effect of individual variation on disease emergence

JO Lloyd-Smith et al.

NATURE (2005)

Article Multidisciplinary Sciences

Bats are natural reservoirs of SARS-like coronaviruses

WD Li et al.

SCIENCE (2005)

Article Multidisciplinary Sciences

Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats

SKP Lau et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Protease-mediated enhancement of severe acute respiratory syndrome coronavirus infection

S Matsuyama et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Receptor and viral determinants of SARS-coronavirus adaptation to human ACE2

WH Li et al.

EMBO JOURNAL (2005)

Article Infectious Diseases

Evidence from the evolutionary analysis of nucleotide sequences for a recombinant history of SARS-CoV

Michael J. Stanhope et al.

INFECTION GENETICS AND EVOLUTION (2004)

Article Immunology

SARS-related virus predating SARS outbreak, Hong Kong

BJ Zheng et al.

EMERGING INFECTIOUS DISEASES (2004)

Article Multidisciplinary Sciences

SARS virus infection of cats and ferrets

BEE Martina et al.

NATURE (2003)

Review Virology

Nipah virus outbreak in Malaysia

KB Chua

JOURNAL OF CLINICAL VIROLOGY (2003)

Article Biochemistry & Molecular Biology

Rates of molecular evolution in RNA viruses: A quantitative phylogenetic analysis

GM Jenkins et al.

JOURNAL OF MOLECULAR EVOLUTION (2002)