4.8 Article

Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications

Journal

NATURE METHODS
Volume 18, Issue 12, Pages 1489-+

Publisher

NATURE PORTFOLIO
DOI: 10.1038/s41592-021-01315-z

Keywords

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Funding

  1. Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community Foundation
  2. NIH [U01CA200059, 1U01EB021238, 8U01DA047733-05, 5R01GM126045-04]
  3. NSF [1917206]
  4. Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community Foundation [2020-225398, 2019-198107]
  5. National Infrastructure France BioImaging [ANR-10-INBS-04]
  6. IBISA consortium
  7. NIH-NINDS Neuroscience Center Support Grant [P30 NS045892, RRID:SCR_019060]
  8. NIH-NICHD Intellectual and Developmental Disabilities Research Center Support Grant [P50 HD103573]
  9. Deutsche Forschungsgemeinschaft [180879236 INF, SFB 944]
  10. Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) [Ni 451/9-1 MIAP-Freiburg, 267205415SFB 1208]
  11. [2019-198155 (5022)]
  12. Div Of Molecular and Cellular Bioscience
  13. Direct For Biological Sciences [1917206] Funding Source: National Science Foundation

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Micro-Meta App is an intuitive, highly interoperable, open-source software tool developed to facilitate the extraction and collection of relevant microscopy metadata according to recent community guidelines.
For quality, interpretation, reproducibility and sharing value, microscopy images should be accompanied by detailed descriptions of the conditions that were used to produce them. Micro-Meta App is an intuitive, highly interoperable, open-source software tool that was developed in the context of the 4D Nucleome (4DN) consortium and is designed to facilitate the extraction and collection of relevant microscopy metadata as specified by the recent 4DN-BINA-OME tiered-system of Microscopy Metadata specifications. In addition to substantially lowering the burden of quality assurance, the visual nature of Micro-Meta App makes it particularly suited for training purposes. Micro-Meta App is an intuitive, highly interoperable, open-source software tool designed to facilitate the extraction and collection of relevant microscopy metadata as specified by recent community guidelines.

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