4.8 Article

Tracing the incorporation of the ninth sulfur into the nitrogenase cofactor precursor with selenite and tellurite

Journal

NATURE CHEMISTRY
Volume 13, Issue 12, Pages 1228-+

Publisher

NATURE PORTFOLIO
DOI: 10.1038/s41557-021-00799-8

Keywords

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Funding

  1. NIH-NIGMS [GM67626, GM141046, R35 GM126961, GM110501, GM126289]
  2. International Collaborative Research Program of ICR, Kyoto University
  3. Takeda Science Foundation
  4. Tatematsu Foundation
  5. Kyoto University Research Fund for Young Scientist (Start-Up)
  6. US Department of Energy, Office of Science, Office of Basic Energy Sciences [DE-AC02-76SF00515]
  7. DOE Office of Biological and Environmental Research
  8. National Institutes of Health, National Institute of General Medical Sciences [P30GM133894]
  9. MEXT Japan [19H02733, 20K21207]
  10. Grants-in-Aid for Scientific Research [20K21207, 19H02733] Funding Source: KAKEN

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The study investigates the insertion of the 'ninth sulfur' in the biosynthesis of cofactors, revealing its role in cluster transfer and the incorporation of Se2- and Te2- species into the cluster. The research also proposes a mechanism involving the reduction of SO32- to S2- for labeling the catalytically important belt region for nitrogenase mechanistic investigations.
Molybdenum nitrogenase catalyses the reduction of N-2 to NH3 at its cofactor, an [(R-homocitrate)MoFe7S9C] cluster synthesized via the formation of a [Fe8S9C] L-cluster prior to the insertion of molybdenum and homocitrate. We have previously identified a [Fe8S8C] L*-cluster, which is homologous to the core structure of the L-cluster but lacks the 'ninth sulfur' in the belt region. However, direct evidence and mechanistic details of the L*- to L-cluster conversion upon 'ninth sulfur' insertion remain elusive. Here we trace the 'ninth sulfur' insertion using SeO32- and TeO32- as 'labelled' SO32-. Biochemical, electron paramagnetic resonance and X-ray absorption spectroscopy/extended X-ray absorption fine structure studies suggest a role of the 'ninth sulfur' in cluster transfer during cofactor biosynthesis while revealing the incorporation of Se2-- and Te2--like species into the L-cluster. Density functional theory calculations further point to a plausible mechanism involving in situ reduction of SO32- to S2-, thereby suggesting the utility of this reaction to label the catalytically important belt region for mechanistic investigations of nitrogenase.

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