Related references
Note: Only part of the references are listed.Quantifying the effect of experimental perturbations at single-cell resolution
Daniel B. Burkhardt et al.
NATURE BIOTECHNOLOGY (2021)
Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench
Ruben Chazarra-Gil et al.
NUCLEIC ACIDS RESEARCH (2021)
Detection of differentially abundant cell subpopulations in scRNA-seq data
Jun Zhao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells
Robrecht Cannoodt et al.
NATURE COMMUNICATIONS (2021)
New insights on the role of vascular endothelial growth factor in biliary pathophysiology
Valeria Mariotti et al.
JHEP REPORTS (2021)
Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin
Sai Ma et al.
CELL (2020)
Ageing compromises mouse thymus function and remodels epithelial cell differentiation
Jeanette Baran-Gale et al.
ELIFE (2020)
The Role of Sinusoidal Endothelial Cells in the Axis of Inflammation and Cancer Within the Liver
Alex L. Wilkinson et al.
FRONTIERS IN PHYSIOLOGY (2020)
Ductular Reaction in Liver Diseases: Pathological Mechanisms and Translational Significances
Keisaku Sato et al.
HEPATOLOGY (2019)
A single-cell molecular map of mouse gastrulation and early organogenesis
Blanca Pijuan-Sala et al.
NATURE (2019)
Current best practices in single-cell RNA-seq analysis: a tutorial
Malte D. Luecken et al.
MOLECULAR SYSTEMS BIOLOGY (2019)
MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices
Christopher S. McGinnistm et al.
NATURE METHODS (2019)
Resolving the fibrotic niche of human liver cirrhosis at single-cell level
P. Ramachandran et al.
NATURE (2019)
High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell
Song Chen et al.
NATURE BIOTECHNOLOGY (2019)
An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome
Chenxu Zhu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)
Challenges in unsupervised clustering of single-cell RNA-seq data
Vladimir Yu Kiselev et al.
NATURE REVIEWS GENETICS (2019)
Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
Laleh Haghverdi et al.
NATURE BIOTECHNOLOGY (2018)
Bias, robustness and scalability in single-cell differential expression analysis
Charlotte Soneson et al.
NATURE METHODS (2018)
Joint profiling of chromatin accessibility and gene expression in thousands of single cells
Junyue Cao et al.
SCIENCE (2018)
Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics
Marlon Stoeckius et al.
GENOME BIOLOGY (2018)
Lectin-complement pathway molecules are decreased in patients with cirrhosis and constitute the risk of bacterial infections
Ildiko Foldi et al.
LIVER INTERNATIONAL (2017)
A single-cell survey of the small intestinal epithelium
Adam L. Haber et al.
NATURE (2017)
Simultaneous epitope and transcriptome measurement in single cells
Marlon Stoeckius et al.
NATURE METHODS (2017)
Testing for differential abundance in mass cytometry data
Aaron T. L. Lun et al.
NATURE METHODS (2017)
Pooled CRISPR screening with single-cell transcriptome readout
Paul Datlinger et al.
NATURE METHODS (2017)
Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq
Diego Adhemar Jaitin et al.
CELL (2016)
Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens
Atray Dixit et al.
CELL (2016)
Wishbone identifies bifurcating developmental trajectories from single-cell data
Manu Setty et al.
NATURE BIOTECHNOLOGY (2016)
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
Maxim V. Kuleshov et al.
NUCLEIC ACIDS RESEARCH (2016)
Trajectories of cell-cycle progression from fixed cell populations
Gabriele Gut et al.
NATURE METHODS (2015)
Orchestrating high-throughput genomic analysis with Bioconductor
Wolfgang Huber et al.
NATURE METHODS (2015)
limma powers differential expression analyses for RNA-sequencing and microarray studies
Matthew E. Ritchie et al.
NUCLEIC ACIDS RESEARCH (2015)
Vascular biology of the biliary epithelium
Carola M. Morell et al.
JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY (2013)
FcγRIIb on Liver Sinusoidal Endothelium Clears Small Immune Complexes
Latha P. Ganesan et al.
JOURNAL OF IMMUNOLOGY (2012)
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
Davis J. McCarthy et al.
NUCLEIC ACIDS RESEARCH (2012)
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Whole-exome sequencing for finding de novo mutations in sporadic mental retardation
Peter N. Robinson
GENOME BIOLOGY (2010)
The cytokine RANKL produced by positively selected thymocytes Fosters medullary thymic epithelial cells that express autoimmune regulator
Yu Hikosaka et al.
IMMUNITY (2008)
The tumor necrosis factor family receptors RANK and CD40 cooperatively establish the thymic medullary microenvironment and self-tolerance
Taishin Akiyama et al.
IMMUNITY (2008)
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman et al.
GENOME BIOLOGY (2004)