Journal
MICROBIAL ECOLOGY
Volume 84, Issue 4, Pages 1087-1102Publisher
SPRINGER
DOI: 10.1007/s00248-021-01923-4
Keywords
16S RNA; Gut microbiota; Microbial dynamic analysis; Time-series study; Postmortem interval estimation
Categories
Funding
- National Natural Science Foundation of China [81730056]
- Key Research and Development Program of Shaanxi [2020SF-133]
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The study investigated microbial succession patterns during decomposition, identified seven different succession patterns, and developed a random forest regression model to predict postmortem intervals. Lactobacillus, Dubosiella, Enterococcus, and the Lachnospiraceae NK4A136 group were considered significant biomarkers for the model.
Microorganisms play a vital role in the decomposition of vertebrate remains in natural nutrient cycling, and the postmortem microbial succession patterns during decomposition remain unclear. The present study used hierarchical clustering based on Manhattan distances to analyze the similarities and differences among postmortem intestinal microbial succession patterns based on microbial 16S rDNA sequences in a mouse decomposition model. Based on the similarity, seven different classes of succession patterns were obtained. Generally, the normal intestinal flora in the cecum was gradually decreased with changes in the living conditions after death, while some facultative anaerobes and obligate anaerobes grew and multiplied upon oxygen consumption. Furthermore, a random forest regression model was developed to predict the postmortem interval based on the microbial succession trend dataset. The model demonstrated a mean absolute error of 20.01 h and a squared correlation coefficient of 0.95 during 15-day decomposition. Lactobacillus, Dubosiella, Enterococcus, and the Lachnospiraceae NK4A136 group were considered significant biomarkers for this model according to the ranked list. The present study explored microbial succession patterns in terms of relative abundances and variety, aiding in the prediction of postmortem intervals and offering some information on microbial behaviors in decomposition ecology.
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