4.7 Article

Integrative proteomics and phosphoproteomics reveals phosphorylation networks involved in the maintenance and expression of embryogenic competence in sugarcane callus

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Pretreatment free of 2,4-dichlorophenoxyacetic acid improves the differentiation of sugarcane somatic embryos by affecting the hormonal balance and the accumulation of reserves

Ricardo Souza Reis et al.

Summary: This study demonstrated that reducing residual 2,4-D levels in embryogenic calli of sugarcane is crucial for efficient differentiation into somatic embryos. The balance of hormones, including ABA, ethylene, and auxin, plays a significant role in the accumulation of storage reserves and the development of somatic embryos in vitro.

PLANT CELL TISSUE AND ORGAN CULTURE (2021)

Article Biochemistry & Molecular Biology

Stage-specific protein regulation during somatic embryo development of Carica papaya L. 'Golden'

Nadia Botini et al.

Summary: Proteomic analysis revealed differential accumulation of proteins in different developmental stages of Carica papaya somatic embryos, with a higher abundance of ribosomal and mitochondrial proteins in early stages and seed maturation proteins in late stages.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2021)

Review Plant Sciences

Repressor for hire! The vital roles of TOPLESS-mediated transcriptional repression in plants

Alastair Robert Plant et al.

Summary: Transcriptional corepressors, particularly the TOPLESS (TPL) family, are crucial for regulating gene expression in plant growth and development. TPL proteins are essential for various developmental processes and responses to external challenges. Understanding the evolutionary history and mechanism of action of these plant-specific proteins can provide insights into their significance in plant development.

NEW PHYTOLOGIST (2021)

Review Plant Sciences

WUSCHEL: a master regulator in plant growth signaling

Priyanka Jha et al.

PLANT CELL REPORTS (2020)

Article Biochemical Research Methods

Label-Free Quantitative Phosphoproteomics Reveals Signaling Dynamics Involved in Embryogenic Competence Acquisition in Sugarcane

Felipe A. Almeida et al.

JOURNAL OF PROTEOME RESEARCH (2020)

Article Multidisciplinary Sciences

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

Yingyao Zhou et al.

NATURE COMMUNICATIONS (2019)

Article Biochemistry & Molecular Biology

The PRIDE database and related tools and resources in 2019: improving support for quantification data

Yasset Perez-Riverol et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Biochemistry & Molecular Biology

The Arabidopsis Calcium-Dependent Protein Kinases (CDPKs) and Their Roles in Plant Growth Regulation and Abiotic Stress Responses

Sujuan Shi et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

Article Biochemical Research Methods

Embryogenic Competence Acquisition in Sugar Cane Callus Is Associated with Differential W-Pump Abundance and Activity

Lucas Z. Passamani et al.

JOURNAL OF PROTEOME RESEARCH (2018)

Article Multidisciplinary Sciences

A mosaic monoploid reference sequence for the highly complex genome of sugarcane

Olivier Garsmeur et al.

NATURE COMMUNICATIONS (2018)

Review Cell Biology

Regulation of Division and Differentiation of Plant Stem Cells

Edith Pierre-Jerome et al.

ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 34 (2018)

Article Biochemical Research Methods

Online Parallel Accumulation Serial Fragmentation (PASEF) with a Novel Trapped on Mobility Mass Spectrometer

Florian Meier et al.

MOLECULAR & CELLULAR PROTEOMICS (2018)

Review Plant Sciences

Advanced Proteomic Approaches to Elucidate Somatic Embryogenesis

Victor Aguilar-Hernandez et al.

FRONTIERS IN PLANT SCIENCE (2018)

Article Plant Sciences

A phosphoproteomic landscape of rice (Oryza sativa) tissues

Yifeng Wang et al.

PHYSIOLOGIA PLANTARUM (2017)

Article Plant Sciences

Protein sumoylation and phosphorylation intersect in Arabidopsis signaling

Ella Nukarinen et al.

PLANT JOURNAL (2017)

Review Plant Sciences

New insights into plant somatic embryogenesis: an epigenetic view

Vijay Kumar et al.

ACTA PHYSIOLOGIAE PLANTARUM (2017)

Article Plant Sciences

Subunit and chlorophyll organization of the plant photosystem II supercomplex

Laura S. van Bezouwen et al.

NATURE PLANTS (2017)

Article Plant Sciences

Abundant protein phosphorylation potentially regulates Arabidopsis anther development

Juanying Ye et al.

JOURNAL OF EXPERIMENTAL BOTANY (2016)

Article Biochemical Research Methods

Putrescine induces somatic embryo development and proteomic changes in embryogenic callus of sugarcane

Ricardo Souza Reis et al.

JOURNAL OF PROTEOMICS (2016)

Article Biochemistry & Molecular Biology

The proteome and phosphoproteome of maize pollen uncovers fertility candidate proteins

Qing Chao et al.

PLANT MOLECULAR BIOLOGY (2016)

Article Multidisciplinary Sciences

Integration of omic networks in a developmental atlas of maize

Justin W. Walley et al.

SCIENCE (2016)

Review Biochemistry & Molecular Biology

Somatic embryogenesis - Stress-induced remodeling of plant cell fate

Attila Feher

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2015)

Review Plant Sciences

Illuminating Progress in Phytochrome-Mediated Signaling Pathways

Xiaosa Xu et al.

TRENDS IN PLANT SCIENCE (2015)

Article Biochemical Research Methods

Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics

Ute Distler et al.

NATURE METHODS (2014)

Article Biochemistry & Molecular Biology

Molecular characterization of the Brassica rapa auxin-repressed, superfamily genes, BrARP1 and BrDRM1

Jeongyeo Lee et al.

MOLECULAR BIOLOGY REPORTS (2013)

Article Multidisciplinary Sciences

CDC5, a DNA binding protein, positively regulates posttranscriptional processing and/or transcription of primary microRNA transcripts

Shuxin Zhang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action

Pengcheng Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Biochemical Research Methods

Genetically modified sugarcane for bioenergy generation

Paulo Arruda

CURRENT OPINION IN BIOTECHNOLOGY (2012)

Article Biochemistry & Molecular Biology

NERD, a Plant-Specific GW Protein, Defines an Additional RNAi-Dependent Chromatin-Based Pathway in Arabidopsis

Dominique Pontier et al.

MOLECULAR CELL (2012)

Article Biochemistry & Molecular Biology

SPT6L Encoding a Putative WG/GW-Repeat Protein Regulates Apical-Basal Polarity of Embryo in Arabidopsis

Xiao-Lu Gu et al.

MOLECULAR PLANT (2012)

Review Plant Sciences

Molecular mechanisms of seed dormancy

Kai Graeber et al.

PLANT CELL AND ENVIRONMENT (2012)

Article Plant Sciences

Characterization of the phosphoproteome of mature Arabidopsis pollen

Pururawa Mayank et al.

PLANT JOURNAL (2012)

Article Developmental Biology

The control of axillary meristem fate in the maize ramosa pathway

Andrea Gallavotti et al.

DEVELOPMENT (2010)

Review Biotechnology & Applied Microbiology

Sugarcane for bioenergy production: an assessment of yield and regulation of sucrose content

Alessandro J. Waclawovsky et al.

PLANT BIOTECHNOLOGY JOURNAL (2010)

Article Biochemical Research Methods

Universal sample preparation method for proteome analysis

Jacek R. Wisniewski et al.

NATURE METHODS (2009)

Article Multidisciplinary Sciences

TOPLESS regulates apical embryonic fate in Arabidopsis

JA Long et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)