Reliable recognition of DNA methylation using bioanalysis of hybridization on the surface of Ag/GQD nanocomposite stabilized on poly (β-cyclodextrin): A new platform for DNA damage studies using genosensor technology

Due to the role of DNA methylation in causing cancer in the present study, an innovative and inexpensive method was designed for the sensitive detection of DNA methylation. The silver-graphene quantum dots (Ag/GQDs) nano ink with high electrical conductivity was used as a substrate for genosensor fabrication toward identification of DNA hybridization. Also, poly (beta-cyclodextrin) (p[beta-CD]) has been used as a biointerface for the stabilization of Ag/GQD nano ink. The thiolated pDNA strand (5 '-SH-TCCGCTTCCCGACCCGCACTCCGC-3 ') (as bioreceptor element) was fixed on the substrate and hybridized with methylated (5 '-GC(M)GGAGTGC(M)GGGTC(M)GGGAAGC(M)GGA-3 ') and unmethylated (5 '-GCGGAGTGCGGGTCGGGAAGCGGA-3 ') cDNAs, as target sequences were studied using electroanalysis methods. Under optimal conditions and using electrochemical techniques, the linear range was 1 am to 1 pm with LLOQ of 1aM. Finally, the designed DNA genosensor was used for detection of DNA methylation in human plasma samples and can be used to detect methylation in patient samples. It is expected that the designed DNA-based biodevice will be used to early stage diagnosis of cancer using monitoring of DNA methylation. Also, this type of genosensor can be used for epigenetic studies in the near future.

Automated summary

In this study, a novel and affordable method was developed for sensitive detection of DNA methylation using Ag/GQDs nano ink and p[β-CD]. Through electrochemical techniques, DNA methylation can be detected in human plasma samples.