Related references
Note: Only part of the references are listed.Cellpose: a generalist algorithm for cellular segmentation
Carsen Stringer et al.
NATURE METHODS (2021)
Mitochondrial DNA alterations underlie an irreversible shift to aerobic glycolysis in fumarate hydratase-deficient renal cancer
Daniel R. Crooks et al.
SCIENCE SIGNALING (2021)
Mitochondrial protein phosphorylation in yeast revisited
Jan Frankovsky et al.
MITOCHONDRION (2021)
Absolute yeast mitochondrial proteome quantification reveals trade-off between biosynthesis and energy generation during diauxic shift
Francesca Di Bartolomeo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Mitochondrial HMG-Box Containing Proteins: From Biochemical Properties to the Roles in Human Diseases
Veronika Vozarikova et al.
BIOMOLECULES (2020)
NetSurfP-2.0: Improved prediction of protein structural features by integrated deep learning
Michael Schantz Klausen et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2019)
Systematic analysis of the lysine succinylome in the model medicinal mushroom Ganoderma lucidum
Guangyuan Wang et al.
BMC GENOMICS (2019)
Succinylome Analysis Reveals the Involvement of Lysine Succinylation in the Extreme Resistance of Deinococcus radiodurans
Congli Zhou et al.
PROTEOMICS (2019)
Quantitative succinyl-proteome profiling of Chinese hickory (Carya cathayensis) during the grafting process
Huwei Yuan et al.
BMC PLANT BIOLOGY (2019)
Mitochondrial proteins: from biogenesis to functional networks
Nikolaus Pfanner et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2019)
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
Huaiyu Mi et al.
NUCLEIC ACIDS RESEARCH (2019)
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Yasset Perez-Riverol et al.
NUCLEIC ACIDS RESEARCH (2019)
Fungal acetylome comparative analysis identifies an essential role of acetylation in human fungal pathogen virulence
Yanjian Li et al.
COMMUNICATIONS BIOLOGY (2019)
Succinyl-proteome profiling of Pyricularia oryzae, a devastating phytopathogenic fungus that causes rice blast disease
Jiaoyu Wang et al.
SCIENTIFIC REPORTS (2019)
MolProbity: More and better reference data for improved all-atom structure validation
Christopher J. Williams et al.
PROTEIN SCIENCE (2018)
Improvements to the APBS biomolecular solvation software suite
Elizabeth Jurrus et al.
PROTEIN SCIENCE (2018)
Proteome-wide lysine acetylation identification in developing rice (Oryza sativa) seeds and protein co-modification by acetylation, succinylation, ubiquitination, and phosphorylation
Xiaoxi Meng et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2018)
Biological Role and Therapeutic Potential of IDH Mutations in Cancer
Matthew S. Waitkus et al.
CANCER CELL (2018)
Lysine Succinylation and Acetylation in Pseudomonas aeruginosa
Charlotte Gaviard et al.
JOURNAL OF PROTEOME RESEARCH (2018)
Systematic identification of mitochondrial lysine succinylome in silkworm (Bombyx mori) midgut during the larval gluttonous stage
Jine Chen et al.
JOURNAL OF PROTEOMICS (2018)
Lysine Succinylation Contributes to Aflatoxin Production and Pathogenicity in Aspergillus flavus
Silin Ren et al.
MOLECULAR & CELLULAR PROTEOMICS (2018)
Features and regulation of non-enzymatic post-translational modifications
Robert Harmel et al.
NATURE CHEMICAL BIOLOGY (2018)
Improving succinylation prediction accuracy by incorporating the secondary structure via helix, strand and coil, and evolutionary information from profile bigrams
Abdollah Dehzangi et al.
PLOS ONE (2018)
Overview of refinement procedures within REFMAC5: utilizing data from different sources
Oleg Kovalevskiy et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2018)
Unification of Protein Abundance Datasets Yields a Quantitative Saccharomyces cerevisiae Proteome
Brandon Ho et al.
CELL SYSTEMS (2018)
Post-translational modification of nucleoid-associated proteins: an extra layer of functional modulation in bacteria?
Ivar W. Dilweg et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2018)
Chemical and Physiological Features of Mitochondrial Acylation
Alison E. Ringel et al.
MOLECULAR CELL (2018)
Mitochondria-cytosol-nucleus crosstalk: learning from Saccharomyces cerevisiae
Nicoletta Guaragnella et al.
FEMS YEAST RESEARCH (2018)
DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p
Arka Chakraborty et al.
NUCLEIC ACIDS RESEARCH (2017)
Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase
Xiao Guo et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2017)
KAT2A coupled with the α-KGDH complex acts as a histone H3 succinyltransferase
Yugang Wang et al.
NATURE (2017)
Organization and dynamics of yeast mitochondrial nucleoids
Isamu Miyakawa
PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES (2017)
Landscape of submitochondrial protein distribution
F. -Nora Voegtle et al.
NATURE COMMUNICATIONS (2017)
Definition of a High-Confidence Mitochondrial Proteome at Quantitative Scale
Marcel Morgenstern et al.
CELL REPORTS (2017)
The role of Lon-mediated proteolysis in the dynamics of mitochondrial nucleic acid-protein complexes
Nina Kunova et al.
SCIENTIFIC REPORTS (2017)
Quantitative Succinyl-Proteome Profiling of Camellia sinensis cv. 'Anji Baicha' During Periodic Albinism
Yan-Xia Xu et al.
SCIENTIFIC REPORTS (2017)
Succinyl-proteome profiling of Dendrobium officinale, an important traditional Chinese orchid herb, revealed involvement of succinylation in the glycolysis pathway
Shangguo Feng et al.
BMC GENOMICS (2017)
The first succinylome profile of Trichophyton rubrum reveals lysine succinylation on proteins involved in various key cellular processes
Xingye Xu et al.
BMC GENOMICS (2017)
Global analysis of protein lysine succinylation profiles in common wheat
Yumei Zhang et al.
BMC GENOMICS (2017)
A Class of Reactive Acyl-CoA Species Reveals the Non-enzymatic Origins of Protein Acylation
Gregory R. Wagner et al.
CELL METABOLISM (2017)
Yeast mitochondrial HMG proteins: DNA-binding properties of the most evolutionarily divergent component of mitochondrial nucleoids
Jana Bakkaiova et al.
BIOSCIENCE REPORTS (2016)
Bacterial protein acetylation: new discoveries unanswered questions
Alan J. Wolfe
CURRENT GENETICS (2016)
Altered acetylation and succinylation profiles in Corynebacterium glutamicum in response to conditions inducing glutamate overproduction
Yuta Mizuno et al.
MICROBIOLOGYOPEN (2016)
Global Profiling of Protein Lysine Malonylation in Escherichia coli Reveals Its Role in Energy Metabolism
Lili Qian et al.
JOURNAL OF PROTEOME RESEARCH (2016)
Systematic Analysis of the Lysine Succinylome in Candida albicans
Hailin Zheng et al.
JOURNAL OF PROTEOME RESEARCH (2016)
Succinyl-proteome profiling of a high taxol containing hybrid Taxus species (Taxus x media) revealed involvement of succinylation in multiple metabolic pathways
Chenjia Shen et al.
SCIENTIFIC REPORTS (2016)
Proteome-Wide Identification of Lysine Succinylation in the Proteins of Tomato (Solanum lycopersicum)
Weibo Jin et al.
PLOS ONE (2016)
The complex crosstalk between mitochondria and the nucleus: What goes in between?
Umut Cagin et al.
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2015)
Alpha-ketoglutarate dehydrogenase complex-dependent succinylation of proteins in neurons and neuronal cell lines
Gary E. Gibson et al.
JOURNAL OF NEUROCHEMISTRY (2015)
Succinylome Analysis Reveals the Involvement of Lysine Succinylation in Metabolism in Pathogenic Mycobacterium tuberculosis
Mingkun Yang et al.
MOLECULAR & CELLULAR PROTEOMICS (2015)
NADP+-IDH Mutations Promote Hypersuccinylation that Impairs Mitochondria Respiration and Induces Apoptosis Resistance
Feng Li et al.
MOLECULAR CELL (2015)
Changes in the Acetylome and Succinylome of Bacillus subtilis in Response to Carbon Source
Saori Kosono et al.
PLOS ONE (2015)
Intrinsically Disordered Proteins and Intrinsically Disordered Protein Regions
Christopher J. Oldfield et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83 (2014)
The Strictly Aerobic Yeast Yarrowia lipolytica Tolerates Loss of a Mitochondrial DNA-Packaging Protein
Jana Bakkaiova et al.
EUKARYOTIC CELL (2014)
Systematic Identification of the Lysine Succinylation in the Protozoan Parasite Toxoplasma gondii
Xiaolong Li et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Quantitative variations of the mitochondrial proteome and phosphoproteome during fermentative and respiratory growth in Saccharomyces cerevisiae
Margaux Renvoise et al.
JOURNAL OF PROTEOMICS (2014)
The Succinated Proteome of FH-Mutant Tumours
Ming Yang et al.
METABOLITES (2014)
SIRT5 Regulates the Mitochondrial Lysine Succinylome and Metabolic Networks
Matthew J. Rardin et al.
CELL METABOLISM (2013)
Mitochondrial protein acetylation as a cell-intrinsic, evolutionary driver of fat storage: Chemical and metabolic logic of acetyl-lysine modifications
Sirisha Ghanta et al.
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2013)
SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways
Jeongsoon Park et al.
MOLECULAR CELL (2013)
Lysine Succinylation Is a Frequently Occurring Modification in Prokaryotes and Eukaryotes and Extensively Overlaps with Acetylation
Brian T. Weinert et al.
CELL REPORTS (2013)
Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes
Annette Michalski et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Proteome-wide Analysis of Lysine Acetylation Suggests its Broad Regulatory Scope in Saccharomyces cerevisiae
Peter Henriksen et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Lysine Succinylation and Lysine Malonylation in Histones
Zhongyu Xie et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
NIH Image to ImageJ: 25 years of image analysis
Caroline A. Schneider et al.
NATURE METHODS (2012)
Saccharomyces Genome Database: the genomics resource of budding yeast
J. Michael Cherry et al.
NUCLEIC ACIDS RESEARCH (2012)
Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion
Martin Christen Frolund Thomsen et al.
NUCLEIC ACIDS RESEARCH (2012)
YeastMine-an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit
Rama Balakrishnan et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2012)
Regulation of Mitochondrial Protein Import by Cytosolic Kinases
Oliver Schmidt et al.
CELL (2011)
Signaling at the gate Phosphorylation of the mitochondrial protein import machinery
Sanjana Rao et al.
CELL CYCLE (2011)
Identification of lysine succinylation as a new post-translational modification
Zhihong Zhang et al.
NATURE CHEMICAL BIOLOGY (2011)
Sirt5 Is a NAD-Dependent Protein Lysine Demalonylase and Desuccinylase
Jintang Du et al.
SCIENCE (2011)
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
Bryson D. Bennett et al.
NATURE CHEMICAL BIOLOGY (2009)
Mitochondrial nucleoids from the yeast Candida parapsilosis: expansion of the repertoire of proteins associated with mitochondrial DNA
Isamu Miyakawa et al.
MICROBIOLOGY-SGM (2009)
Novel subfamily of mitochondrial HMG box-containing proteins: functional analysis of Gcf1p from Candida albicans
Katarina Visacka et al.
MICROBIOLOGY-SGM (2009)
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
Juergen Cox et al.
NATURE BIOTECHNOLOGY (2008)
Profiling phosphoproteins of yeast mitochondria reveals a role of phosphorylation in assembly of the ATP synthase
Joerg Reinders et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
A versatile ligation-independent cloning method suitable for high-throughput expression screening applications
Nick S. Berrow et al.
NUCLEIC ACIDS RESEARCH (2007)
Cumulative mutations affecting sterol biosynthesis in the yeast Saccharomyces cerevisiae result in synthetic lethality that is suppressed by alterations in sphingolipid profiles
Martin Valachovic et al.
GENETICS (2006)
The organization and inheritance of the mitochondrial genome
XJ Chen et al.
NATURE REVIEWS GENETICS (2005)
Cleavage site selection within a folded substrate by the ATP-dependent lon protease
G Ondrovicová et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2005)
Probing the active site of homoserine trans-succinylase
R Rosen et al.
FEBS LETTERS (2004)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Mitochondrial protein phosphorylation: Lessons from yeasts
L Tomaska
GENE (2000)
In organello formaldehyde crosslinking of proteins to mtDNA:: Identification of bifunctional proteins
BA Kaufman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Share Paper
