4.6 Article

Evolution of the folding landscape of effector caspases

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

ProteinTools: a toolkit to analyze protein structures

Noelia Ferruz et al.

Summary: ProteinTools is a web server toolkit for protein structure analysis, offering applications for identifying hydrophobic clusters, hydrogen bond networks, salt bridges, and contact maps. Users can input a PDB identifier or upload a structure to access an interactive dynamic web interface.

NUCLEIC ACIDS RESEARCH (2021)

Article Multidisciplinary Sciences

Origin of complexity in haemoglobin evolution

Arvind S. Pillai et al.

NATURE (2020)

Article Biochemistry & Molecular Biology

Caspases from scleractinian coral show unique regulatory features

Suman Shrestha et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2020)

Article Multidisciplinary Sciences

Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein

Sujit Basak et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biochemistry & Molecular Biology

The interdimeric interface controls function and stability of Ureaplasma urealiticum methionine S-adenosyltransferase

Daniel Kleiner et al.

JOURNAL OF MOLECULAR BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Resurrection of ancestral effector caspases identifies novel networks for evolution of substrate specificity

Robert D. Grinshpon et al.

BIOCHEMICAL JOURNAL (2019)

Article Biochemistry & Molecular Biology

Tri-arginine exosite patch of caspase-6 recruits substrates for hydrolysis

Derek J. MacPherson et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2019)

Article Biochemistry & Molecular Biology

Activation of Caspase-6 Is Promoted by a Mutant Huntingtin Fragment and Blocked by an Allosteric Inhibitor Compound

Dagmar E. Ehrnhoefer et al.

CELL CHEMICAL BIOLOGY (2019)

Article Multidisciplinary Sciences

Energy Landscapes for Proteins: From Single Funnels to Multifunctional Systems

Konstantin Roder et al.

ADVANCED THEORY AND SIMULATIONS (2019)

Article Biochemistry & Molecular Biology

Modifications to a common phosphorylation network provide individualized control in caspases

Melvin E. Thomas et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2018)

Article Biochemistry & Molecular Biology

The burst-phase folding intermediate of ribonuclease H changes conformation over evolutionary history

Shion A. Lim et al.

BIOPOLYMERS (2018)

Review Chemistry, Multidisciplinary

Caspase Allostery and Conformational Selection

A. Clay Clark

CHEMICAL REVIEWS (2016)

Article Biochemistry & Molecular Biology

Identification of Caspase-6 as a New Regulator of Alternatively Activated Macrophages

Yongfang Yao et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2016)

Article Multidisciplinary Sciences

Tunable allosteric library of caspase-3 identifies coupling between conserved water molecules and conformational selection

Joseph J. Maciag et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Evolutionary trend toward kinetic stability in the folding trajectory of RNases H

Shion A. Lim et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Biochemistry & Molecular Biology

Phage display and structural studies reveal plasticity in substrate specificity of caspase-3a from zebrafish

Matthew B. Tucker et al.

PROTEIN SCIENCE (2016)

Article Chemistry, Physical

Neither Two-State nor Three-State: Dimerization of Lambda Cro Repressor

John Yao et al.

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2015)

Review Biochemistry & Molecular Biology

Energetics of oligomeric protein folding and association

Colleen M. Doyle et al.

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2013)

Article Biochemistry & Molecular Biology

Lengthening the Intersubunit Linker of Procaspase 3 Leads to Constitutive Activation

Sarah H. MacKenzie et al.

BIOCHEMISTRY (2013)

Article Biochemistry & Molecular Biology

Slow Folding and Assembly of a Procaspase-3 Interface Variant

Sarah H. MacKenzie et al.

BIOCHEMISTRY (2013)

Article Cell Biology

Mechanistic insights into CED-4-mediated activation of CED-3

Weijiao Huang et al.

GENES & DEVELOPMENT (2013)

Review Genetics & Heredity

Evolutionary biochemistry: revealing the historical and physical causes of protein properties

Michael J. Harms et al.

NATURE REVIEWS GENETICS (2013)

Article Multidisciplinary Sciences

Evolutionary diversification of the multimeric states of proteins

Michael Lynch

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Structural snapshots reveal distinct mechanisms of procaspase-3 and-7 activation

Nathan D. Thomsen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Cell Biology

Caspase Functions in Cell Death and Disease

David R. McIlwain et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2013)

Article Biochemistry & Molecular Biology

The Evolution of Multimeric Protein Assemblages

Michael Lynch

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Multidisciplinary Sciences

Predictive energy landscapes for protein-protein association

Weihua Zheng et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemical Research Methods

Human caspases in vitro: Expression, purification and kinetic characterization

Heidi Roschitzki-Voser et al.

PROTEIN EXPRESSION AND PURIFICATION (2012)

Article Multidisciplinary Sciences

Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states

Kosuke Hashimoto et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Folding and assembly kinetics of procaspase-3

Sara L. Milam et al.

PROTEIN SCIENCE (2009)

Review Biochemistry & Molecular Biology

Conformational stability and folding mechanisms of dimeric proteins

Jessica A. O. Rumfeldt et al.

PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY (2008)

Article Multidisciplinary Sciences

Calculation of the Free Energy and Cooperativity of Protein Folding

Alex Kentsis et al.

PLOS ONE (2007)

Review Cell Biology

The folding and evolution of multidomain proteins

Jung-Hoon Han et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Role of loop bundle hydrogen bonds in the maturation and activity of (pro) caspase-3

Brett Feeney et al.

BIOCHEMISTRY (2006)

Article Biochemistry & Molecular Biology

Structure and activation mechanism of the Drosophila initiator caspase Dronc

N Yan et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Biochemistry & Molecular Biology

pH effects on the stability and dimerization of procaspase-3

Kakoli Bose et al.

PROTEIN SCIENCE (2004)

Review Biochemistry & Molecular Biology

The protein structures that shape caspase activity, specificity, activation and inhibition

P Fuentes-Prior et al.

BIOCHEMICAL JOURNAL (2004)

Article Biochemistry & Molecular Biology

Comparison of the folding processes of T-thermophilus and E-coli ribonucleases H

J Hollien et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Biochemistry & Molecular Biology

Classification of the caspase-hemoglobinase fold: Detection of new families and implications for the origin of the eukaryotic separins

L Aravind et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2002)

Article Biochemistry & Molecular Biology

Dimeric procaspase-3 unfolds via a four-state equilibrium process

K Bose et al.

BIOCHEMISTRY (2001)

Article Biochemistry & Molecular Biology

Removal of the pro-domain does not affect the conformation of the procaspase-3 dimer

C Pop et al.

BIOCHEMISTRY (2001)

Article Biochemistry & Molecular Biology

Executioner caspase-3,-6, and-7 perform distinct, non-redundant roles during the demolition phase of apoptosis

EA Slee et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2001)