4.8 Article

Terrestrial connectivity, upstream aquatic history and seasonality shape bacterial community assembly within a large boreal aquatic network

Related references

Note: Only part of the references are listed.
Article Ecology

Microbial community assembly in a multi-layer dendritic metacommunity

Nathan I. Wisnoski et al.

Summary: Metacommunity ecology aims to understand the processes underlying community assembly at local and regional scales. This study on a fifth-order mountain stream network reveals spatial patterns of community assembly in different habitats across scales, with vertical habitat structure playing a role in scale-dependent processes. The research highlights the impact of branching patterns and directional flow on the balance between local and regional factors during assembly.

OECOLOGIA (2021)

Article Microbiology

Contrasting community assembly processes structure lotic bacteria metacommunities along the river continuum

Hyun S. Gweon et al.

Summary: The study of microbial communities in different habitats along the River Thames in the UK showed distinct differences in bacterial communities, with sediment and biofilm communities displaying higher homogeneity compared to free-living and particle-associated communities. This suggests that deterministic environmental filtering plays a larger role in shaping sediment and biofilm communities.

ENVIRONMENTAL MICROBIOLOGY (2021)

Article Ecology

Soil microbial inoculation during flood events shapes headwater stream microbial communities and diversity

Florian Caillon et al.

Summary: Flood events are recognized as important occasions for the transfer of soil microbes to stream ecosystems, affecting bacterial community composition and diversity. Soil inoculation during high flow events in pre-alpine streams and the Oberer Seebach alters stream bacterial community composition, with higher bacterial diversity observed during high flow in headwater streams.

MICROBIAL ECOLOGY (2021)

Article Multidisciplinary Sciences

Seasonal dynamics of lotic bacterial communities assessed by 16S rRNA gene amplicon deep sequencing

Lisa Paruch et al.

SCIENTIFIC REPORTS (2020)

Article Biochemical Research Methods

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

Emmanuel Paradis et al.

BIOINFORMATICS (2019)

Article Microbiology

Temporal and spatial dynamics in microbial community composition within a temperate stream network

Norman Hassell et al.

ENVIRONMENTAL MICROBIOLOGY (2018)

Article Biotechnology & Applied Microbiology

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

Donovan H. Parks et al.

NATURE BIOTECHNOLOGY (2018)

Review Microbiology

Understanding how microbiomes influence the systems they inhabit

Ed K. Hall et al.

NATURE MICROBIOLOGY (2018)

Article Ecology

Identifying the core seed bank of a complex boreal bacterial metacommunity

Clara Ruiz-Gonzalez et al.

ISME JOURNAL (2017)

Review Microbiology

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

Jizhong Zhou et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2017)

Article Microbiology

Bacterial Biogeography across the Amazon River-Ocean Continuum

Mary Doherty et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Environmental Sciences

The Optical, Chemical, and Molecular Dissolved Organic Matter Succession Along a Boreal Soil-Stream-River Continuum

Ryan H. S. Hutchins et al.

JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES (2017)

Article Microbiology

Bacterial Dormancy Is More Prevalent in Freshwater than Hypersaline Lakes

Zachary T. Aanderud et al.

FRONTIERS IN MICROBIOLOGY (2016)

Review Ecology

Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

Tadashi Fukami

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 46 (2015)

Article Ecology

Terrestrial origin of bacterial communities in complex boreal freshwater networks

Clara Ruiz-Gonzalez et al.

ECOLOGY LETTERS (2015)

Article Microbiology

Bacterial diversity along a 2600 km river continuum

Domenico Savio et al.

ENVIRONMENTAL MICROBIOLOGY (2015)

Review Biochemistry & Molecular Biology

Temporal patterns of rarity provide a more complete view of microbial diversity

Ashley Shade et al.

TRENDS IN MICROBIOLOGY (2015)

Article Ecology

Catchment-scale biogeography of riverine bacterioplankton

Daniel S. Read et al.

ISME JOURNAL (2015)

Article Microbiology

Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams

Linda Wilhelm et al.

ENVIRONMENTAL MICROBIOLOGY (2014)

Article Multidisciplinary Sciences

Fluvial network organization imprints on microbial co-occurrence networks

Stefanie Widder et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biochemical Research Methods

Differential abundance analysis for microbial marker-gene surveys

Joseph N. Paulson et al.

NATURE METHODS (2013)

Article Biology

Headwaters are critical reservoirs of microbial diversity for fluvial networks

Katharina Besemer et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)

Article Ecology

Unraveling assembly of stream biofilm communities

Katharina Besemer et al.

ISME JOURNAL (2012)

Article Microbiology

Global patterns in the biogeography of bacterial taxa

Diana R. Nemergut et al.

ENVIRONMENTAL MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Activity of abundant and rare bacteria in a coastal ocean

Barbara J. Campbell et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Dormancy contributes to the maintenance of microbial diversity

Stuart E. Jones et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Biology

CONCEPTUAL SYNTHESIS IN COMMUNITY ECOLOGY

Mark Vellend

QUARTERLY REVIEW OF BIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Biophysical controls on community succession in stream biofilms

Katharina Besemer et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Limnology

External control of bacterial community structure in lakes

ES Lindstrom et al.

LIMNOLOGY AND OCEANOGRAPHY (2006)

Article Multidisciplinary Sciences

Contributions of microbial biofilms to ecosystem processes in stream mesocosms

TJ Battin et al.

NATURE (2003)

Article Multidisciplinary Sciences

Explaining the excess of rare species in natural species abundance distributions

AE Magurran et al.

NATURE (2003)