Related references
Note: Only part of the references are listed.Exploring nature's bounty: identification of Withania somnifera as a promising source of therapeutic agents against COVID-19 by virtual screening and in silico evaluation
Aditi Srivastava et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2022)
Enfuvirtide, an HIV-1 fusion inhibitor peptide, can act as a potent SARS-CoV-2 fusion inhibitor: an in silico drug repurposing study
Khadijeh Ahmadi et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2022)
Molecular docking and simulation studies of natural compounds of Vitex negundo L. against papain-like protease (PLpro) of SARS CoV-2 (coronavirus) to conquer the pandemic situation in the world
Debasis Mitra et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2022)
Using Chou's Five-steps Rule to Classify and Predict Glutathione S-transferases with Different Machine Learning Algorithms and Pseudo Amino Acid Composition
Hassan Mohabatkar et al.
INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS (2021)
Crystal structure of SARS-CoV-2 papain-like protease
Xiaopan Gao et al.
ACTA PHARMACEUTICA SINICA B (2021)
Protease targeted COVID-19 drug discovery and its challenges: Insight into viral main protease (Mpro) and papain-like protease (PLpro) inhibitors
Sk. Abdul Amin et al.
BIOORGANIC & MEDICINAL CHEMISTRY (2021)
In silico Screening of Natural Compounds as Potential Inhibitors of SARS-CoV-2 Main Protease and Spike RBD: Targets for COVID-19
Divya M. Teli et al.
FRONTIERS IN MOLECULAR BIOSCIENCES (2021)
Structure of papain-like protease from SARS-CoV-2 and its complexes with non-covalent inhibitors
Jerzy Osipiuk et al.
NATURE COMMUNICATIONS (2021)
In Silico Identification of Multi-target Anti-SARS-CoV-2 Peptides from Quinoa Seed Proteins
Fai-Chu Wong et al.
INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS (2021)
In Silico Study of the Structure and Ligand Preference of Pyruvate Kinases from Cyanobacterium Synechocystis sp. PCC 6803
Omid Haghighi
APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY (2021)
A CONCISE IN SILICO PREDICTION REPORT OF A POTENTIAL PRION-LIKE DOMAIN IN SARS-COV-2 POLYPROTEIN
Hassan Mohabatkar et al.
JOURNAL OF MICROBIOLOGY BIOTECHNOLOGY AND FOOD SCIENCES (2021)
Working goal of Brazilein sappan wood as a candidate for SARS-coV-2 antivirus drug against spike (S) glycoprotein, papain-like proteinase, and main protease: In silico study
Entuy Kurniawan et al.
JOURNAL OF ADVANCED PHARMACEUTICAL TECHNOLOGY & RESEARCH (2021)
Molecular Docking Investigation of Antiviral Herbal Compounds as Potential Inhibitors of SARS-CoV-2 Spike Receptor
Mandi Soleyman Fallah et al.
BIOINTERFACE RESEARCH IN APPLIED CHEMISTRY (2021)
Molecular docking of potential SARS-CoV-2 papain-like protease inhibitors
Daoqun Li et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2021)
Homology Modeling and Molecular Docking Studies of Glutamate Dehydrogenase (GDH) from Cyanobacterium Synechocystis sp. PCC 6803
Omid Haghighi et al.
INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS (2020)
Coronavirus Disease Pandemic (COVID-19): Challenges and a Global Perspective
Yashpal Singh Malik et al.
PATHOGENS (2020)
Drugs against SARS-CoV-2: What do we know about their mode of action?
Coralie Valle et al.
REVIEWS IN MEDICAL VIROLOGY (2020)
Activity profiling and crystal structures of inhibitor-bound SARS-CoV-2 papain-like protease: A framework for anti-COVID-19 drug design
Wioletta Rut et al.
SCIENCE ADVANCES (2020)
NANOG Decoy Oligodeoxynucleotide-Encapsulated Niosomes Nanocarriers: A Promising Approach to Suppress the Metastatic Properties of U87 Human Glioblastoma Multiforme Cells
Mahmoud Gharbavi et al.
ACS CHEMICAL NEUROSCIENCE (2020)
Union is strength: antiviral and anti-inflammatory drugs for COVID-19
Jose J. Naveja et al.
DRUG DISCOVERY TODAY (2020)
Immunoinformatic design of a COVID-19 subunit vaccine using entire structural immunogenic epitopes of SARS-CoV-2
Esmaeil Behmard et al.
SCIENTIFIC REPORTS (2020)
Can Papain-like Protease Inhibitors Halt SARS-CoV-2 Replication?
Biplab K. Maiti
ACS PHARMACOLOGY & TRANSLATIONAL SCIENCE (2020)
Supporting SARS-CoV-2 Papain-Like Protease Drug Discovery: In silico Methods and Benchmarking
Tamer M. Ibrahim et al.
FRONTIERS IN CHEMISTRY (2020)
Structural insights into the unique inhibitory mechanism of Kunitz type trypsin inhibitor from Cicer arietinum L.
Ameya D. Bendre et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2019)
Peptide-based protease inhibitors from plants
Roland Hellinger et al.
DRUG DISCOVERY TODAY (2019)
PDBsum: Structural summaries of PDB entries
Roman A. Laskowski et al.
PROTEIN SCIENCE (2018)
Divergent Protein Synthesis of Bowman-Birk Protease Inhibitors, their Hydrodynamic Behavior and Co-crystallization with α-Chymotrypsin
Christian W. Tornoe et al.
SYNLETT (2017)
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes
G. C. P. van Zundert et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
The SARS-coronavirus papain-like protease: Structure, function and inhibition by designed antiviral compounds
Yahira M. Baez-Santos et al.
ANTIVIRAL RESEARCH (2015)
Antimicrobial Peptides from Plants
James P. Tam et al.
PHARMACEUTICALS (2015)
Plant Protein Proteinase Inhibitors: Structure and Mechanism of Inhibition
Katherine S. Bateman et al.
CURRENT PROTEIN & PEPTIDE SCIENCE (2011)
Plant Proteinases and Inhibitors: An Overview of Biological Function and Pharmacological Activity
Marco T.R. Gomes et al.
CURRENT PROTEIN & PEPTIDE SCIENCE (2011)
Mechanisms of Macromolecular Protease Inhibitors
Christopher J. Farady et al.
CHEMBIOCHEM (2010)
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
Berk Hess et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
Knottin cyclization: impact on structure and dynamics
Annie Heitz et al.
BMC STRUCTURAL BIOLOGY (2008)
An unusual helix-turn-helix protease inhibitory motif in a novel trypsin inhibitor from seeds of veronica (Veronica hederifolia L.)
Rebecca Conners et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6
C Oostenbrink et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Unbound form of tomato inhibitor-II reveals interdomain flexibility and conformational variability in the reactive site loops
IH Barrette-Ng et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Twists, knots, and rings in proteins - Structural definition of the cyclotide framework
KJ Rosengren et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Structure and dynamics of the potato carboxypeptidase inhibitor by 1H and 15N NMR
C González et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2003)
NMR solution structure of ATTp, an Arabidopsis thaliana trypsin inhibitor
Q Zhao et al.
BIOCHEMISTRY (2002)
Three-dimensional solution structure of oryzacystatin-I, a cysteine proteinase inhibitor of the rice, Oryza sativa L. japonica
K Nagata et al.
BIOCHEMISTRY (2000)