4.7 Article

Time-Resolved Gene Expression Analysis Monitors the Regulation of Inflammatory Mediators and Attenuation of Adaptive Immune Response by Vitamin D

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia

Rogan A. Grant et al.

Summary: The study found that patients infected with SARS-CoV-2 have enriched T cells and monocytes in the alveolar space, suggesting that the virus infects alveolar macrophages and induces T cell production of interferon-, leading to inflammation and persistent alveolitis.

NATURE (2021)

Article Nutrition & Dietetics

Transcriptome-Wide Profile of 25-Hydroxyvitamin D3 in Primary Immune Cells from Human Peripheral Blood

Andrea Hanel et al.

Summary: The study found that 25-hydroxyvitamin D-3 concentrations 100 to 1000 times higher than the reference 10 nM 1,25(OH)(2)D-3 can affect the transcriptome of PBMCs with a profile similar to that of 1,25(OH)(2)D-3.

NUTRIENTS (2021)

Article Immunology

Vitamin D Treatment Sequence Is Critical for Transcriptome Modulation of Immune Challenged Primary Human Cells

Henna-Riikka Malmberg et al.

Summary: This study found that 1,25(OH)(2)D-3 significantly modulates the functional consequences of immune challenges, but the effects largely depend on treatment sequence. The results suggest that a sufficient vitamin D status before an infection may be more important than vitamin D supplementation afterwards.

FRONTIERS IN IMMUNOLOGY (2021)

Letter Biotechnology & Applied Microbiology

The nf-core framework for community-curated bioinformatics pipelines

Philip A. Ewels et al.

NATURE BIOTECHNOLOGY (2020)

Review Biochemistry & Molecular Biology

The cytokine storm in COVID-19: An overview of the involvement of the chemokine/chemokine-receptor system

Francesca Coperchini et al.

CYTOKINE & GROWTH FACTOR REVIEWS (2020)

Review Endocrinology & Metabolism

Genome-wide effects of chromatin on vitamin D signaling

Andrea Hanel et al.

JOURNAL OF MOLECULAR ENDOCRINOLOGY (2020)

Article Medicine, General & Internal

Does vitamin D deficiency increase the severity of COVID-19?

E. Kenneth Weir et al.

CLINICAL MEDICINE (2020)

Review Endocrinology & Metabolism

Vitamin D and COVID-19

John P. Bilezikian et al.

EUROPEAN JOURNAL OF ENDOCRINOLOGY (2020)

Review Biochemistry & Molecular Biology

Vitamin D receptor stimulation to reduce acute respiratory distress syndrome (ARDS) in patients with coronavirus SARS-CoV-2 infections Revised Ms SBMB 2020_166

Jose Manuel Quesada-Gomez et al.

JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY (2020)

Review Biochemistry & Molecular Biology

Machine learning approaches infer vitamin D signaling: Critical impact of vitamin D receptor binding within topologically associated domains

Carsten Carlberg et al.

JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY (2019)

Review Nutrition & Dietetics

Nutrigenomics of Vitamin D

Carsten Carlberg

NUTRIENTS (2019)

Review Physiology

Primary Vitamin D Target Genes of Human Monocytes

Veijo Nurminen et al.

FRONTIERS IN PHYSIOLOGY (2019)

Article Oncology

Vitamin D Signaling Suppresses Early Prostate Carcinogenesis in TgAPT121 Mice

James C. Fleet et al.

CANCER PREVENTION RESEARCH (2019)

Article Biotechnology & Applied Microbiology

Determining cell type abundance and expression from bulk tissues with digital cytometry

Aaron M. Newman et al.

NATURE BIOTECHNOLOGY (2019)

Review Immunology

Vitamin D Signaling in the Context of Innate Immunity: Focus on Human Monocytes

Carsten Carlberg

FRONTIERS IN IMMUNOLOGY (2019)

Article Biochemistry & Molecular Biology

Modulation of vitamin D signaling by the pioneer factor CEBPA

Veijo Nurminen et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2019)

Article Biochemistry & Molecular Biology

In vivo transcriptome changes of human white blood cells in response to vitamin D

Antonio Neme et al.

JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY (2019)

Review Immunology

Alarmins of the S100-Family in Juvenile Autoimmune and Auto-Inflammatory Diseases

Dirk Holzinger et al.

FRONTIERS IN IMMUNOLOGY (2019)

Article Biochemical Research Methods

Comparative analysis of differential gene expression tools for RNA sequencing time course data

Daniel Spies et al.

BRIEFINGS IN BIOINFORMATICS (2019)

Article Multidisciplinary Sciences

DNA methylation as a mediator of HLA-DRB1☆15:01 and a protective variant in multiple sclerosis

Lara Kular et al.

NATURE COMMUNICATIONS (2018)

Review Immunology

S100A8/A9 in Inflammation

Siwen Wang et al.

FRONTIERS IN IMMUNOLOGY (2018)

Review Endocrinology & Metabolism

Vitamin D Genomics: From In Vitro to In Vivo

Carsten Carlberg

FRONTIERS IN ENDOCRINOLOGY (2018)

Review Clinical Neurology

Vitamin D and Multiple Sclerosis: A Comprehensive Review

Martina B. Sintzel et al.

NEUROLOGY AND THERAPY (2018)

Review Cell Biology

Autophagy in Neutrophils: From Granulopoiesis to Neutrophil Extracellular Traps

Panagiotis Skendros et al.

FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2018)

Article Cell Biology

Molecular endocrinology of vitamin D on the epigenome level

Carsten Carlberg

MOLECULAR AND CELLULAR ENDOCRINOLOGY (2017)

Article Biochemistry & Molecular Biology

Selective regulation of biological processes by vitamin D based on the spatio-temporal cistrome of its receptor

Antonio Neme et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2017)

Review Pharmacology & Pharmacy

The Role of Vitamin D in the Immune System as a Pro-survival Molecule

Salvatore Chirumbolo et al.

CLINICAL THERAPEUTICS (2017)

Article Biochemistry & Molecular Biology

Epigenome-wide effects of vitamin D and their impact on the transcriptome of human monocytes involve CTCF

Sabine Seuter et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Biochemistry & Molecular Biology

On the Dependency of Cellular Protein Levels on mRNA Abundance

Yansheng Liu et al.

Article Multidisciplinary Sciences

Patterns of Genome-Wide VDR Locations

Pauli Tuoresmaki et al.

PLOS ONE (2014)

Article Multidisciplinary Sciences

Alarmin S100A8/S100A9 as a biomarker for molecular imaging of local inflammatory activity

Thomas Vogl et al.

NATURE COMMUNICATIONS (2014)

Review Physiology

Vitamin D and gene networks in human osteoblasts

Jeroen van de Peppel et al.

FRONTIERS IN PHYSIOLOGY (2014)

Review Physiology

Genome-wide (over)view on the actions of vitamin D

Carsten Carlberg

FRONTIERS IN PHYSIOLOGY (2014)

Review Physiology

Vitamin D and the RNA transcriptome: more than mRNA regulation

Moray J. Campbell

FRONTIERS IN PHYSIOLOGY (2014)

Review Physiology

Vitamin D: a critical and essential micronutrient for human health

Igor Bendik et al.

FRONTIERS IN PHYSIOLOGY (2014)

Review Genetics & Heredity

Major Histocompatibility Complex Genomics and Human Disease

John Trowsdale et al.

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 14 (2013)

Article Biochemistry & Molecular Biology

Dynamics of 1α,25-dihydroxyvitamin D3-dependent chromatin accessibility of early vitamin D receptor target genes

Sabine Seuter et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2013)

Article Biochemical Research Methods

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Helga Thorvaldsdottir et al.

BRIEFINGS IN BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

A Vitamin D Receptor/SMAD Genomic Circuit Gates Hepatic Fibrotic Response

Ning Ding et al.

Review Immunology

The Chemokine Superfamily Revisited

Albert Zlotnik et al.

IMMUNITY (2012)

Article Biochemistry & Molecular Biology

Nuclear hormone 1α,25-dihydroxyvitamin D3 elicits a genome-wide shift in the locations of VDR chromatin occupancy

Sami Heikkinen et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Review Pharmacology & Pharmacy

Vitamin D: modulator of the immune system

Femke Baeke et al.

CURRENT OPINION IN PHARMACOLOGY (2010)

Article Biochemistry & Molecular Biology

A ChIP-seq defined genome-wide map of vitamin D receptor binding: Associations with disease and evolution

Sreeram V. Ramagopalan et al.

GENOME RESEARCH (2010)

Article Biochemical Research Methods

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

Steffen Durinck et al.

NATURE PROTOCOLS (2009)

Article Nutrition & Dietetics

Vitamin D receptor: molecular signaling and actions of nutritional ligands in disease prevention

Mark R. Haussler et al.

NUTRITION REVIEWS (2008)

Review Rheumatology

Control of autoimmune diseases by the vitamin D endocrine system

Luciano Adorini et al.

NATURE CLINICAL PRACTICE RHEUMATOLOGY (2008)

Article Medicine, General & Internal

Serum 25-hydroxyvitamin D levels and risk of multiple sclerosis

Kassandra L. Munger et al.

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2006)

Article Endocrinology & Metabolism

The nuclear receptor superfamily: A Rosetta Stone for physiology

RM Evans

MOLECULAR ENDOCRINOLOGY (2005)