4.7 Article

Guide RNA acrobatics: positioning consecutive uridines for pseudouridylation by H/ACA pseudouridylation loops with dual guide capacity

Related references

Note: Only part of the references are listed.
Review Microbiology

H/ACA Small Ribonucleoproteins: Structural and Functional Comparison Between Archaea and Eukaryotes

Dominic P. Czekay et al.

Summary: H/ACA sRNPs play crucial roles in ribosome synthesis in archaea and eukaryotes, with both shared general architecture and distinct differences in structure and function. Due to higher protein stability in archaea, there is more detailed information on archaeal H/ACA sRNPs compared to eukaryotes. Long-term studies in yeast have provided a better understanding of the biological role of H/ACA sRNPs in eukaryotes during ribosome biogenesis.

FRONTIERS IN MICROBIOLOGY (2021)

Article Biochemistry & Molecular Biology

Eukaryote specific RNA and protein features facilitate assembly and catalysis of H/ACA snoRNPs

Sven Trucks et al.

Summary: H/ACA box ribonucleoprotein complexes play a crucial role in modifying rRNA and snRNA through sequence specific pseudouridylation in eukaryotes and archaea. Eukaryotic snoRNPs containing specific proteins and RNA structures influence RNP formation and enzymatic activity. Using single molecule FRET spectroscopy, the study examines the impact of different eukaryote-specific proteins and domains on RNA folding and complex assembly, shedding light on the interaction between individual hairpin RNPs in the context of the full, bipartite snoRNP.

NUCLEIC ACIDS RESEARCH (2021)

Article Biochemistry & Molecular Biology

The presence of the ACA box in archaeal H/ACA guide RNAs promotes atypical pseudouridylation

Mrinmoyee Majumder et al.

Review Biochemistry & Molecular Biology

Post-transcriptional pseudouridylation in mRNA as well as in some major types of noncoding RNAs

Hironori Adachi et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2019)

Article Biochemistry & Molecular Biology

MODOMICS: a database of RNA modification pathways. 2017 update

Pietro Boccaletto et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Biochemistry & Molecular Biology

Modifications in small nuclear RNAs and their roles in spliceosome assembly and function

Markus T. Bohnsack et al.

BIOLOGICAL CHEMISTRY (2018)

Article Biochemistry & Molecular Biology

Guide-substrate base-pairing requirement for box H/ACA RNA-guided RNA pseudouridylation

Meemanage D. De Zoysa et al.

Article Biochemistry & Molecular Biology

Landscape of the complete RNA chemical modifications in the human 80S ribosome

Masato Taoka et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Biochemistry & Molecular Biology

Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function

Katherine E. Sloan et al.

RNA BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Nucleotide modifications within bacterial messenger RNAs regulate their translation and are able to rewire the genetic code

Thomas Philipp Hoernes et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

An updated human snoRNAome

Hadi Jorjani et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome

Xiaoyu Li et al.

NATURE CHEMICAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Accurate placement of substrate RNA by Gar1 in H/ACA RNA-guided pseudouridylation

Peng Wang et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells

Thomas M. Carlile et al.

NATURE (2014)

Review Biochemistry & Molecular Biology

Pseudouridine: Still mysterious, but never a fake (uridine)!

Felix Spenkuch et al.

RNA BIOLOGY (2014)

Article Biochemistry & Molecular Biology

RNA-guided isomerization of uridine to pseudouridine-pseudouridylation

Yi-Tao Yu et al.

RNA BIOLOGY (2014)

Review Biochemistry & Molecular Biology

Small nucleolar RNAs and RNA-guided post-transcriptional modification

Lauren Lui et al.

ROLE OF NON-CODING RNAS IN BIOLOGY (2013)

Review Biochemistry & Molecular Biology

Defining the RGG/RG Motif

Palaniraja Thandapani et al.

MOLECULAR CELL (2013)

Article Multidisciplinary Sciences

Unusual base pairing during the decoding of a stop codon by the ribosome

Israel S. Fernandez et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Novel small Cajal-body-specific RNAs identified in Drosophila: probing guide RNA function

Svetlana Deryusheva et al.

Review Biochemistry & Molecular Biology

RNA pseudouridylation: new insights into an old modification

Junhui Ge et al.

TRENDS IN BIOCHEMICAL SCIENCES (2013)

Review Cell Biology

The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA

Nicholas J. Watkins et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2012)

Article Multidisciplinary Sciences

Converting nonsense codons into sense codons by targeted pseudouridylation

John Karijolich et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

Specificity and Stoichiometry of Subunit Interactions in the Human Telomerase Holoenzyme Assembled In Vivo

Emily D. Egan et al.

MOLECULAR AND CELLULAR BIOLOGY (2010)

Review Biochemistry & Molecular Biology

Box H/ACA Small Ribonucleoproteins

Tamas Kiss et al.

MOLECULAR CELL (2010)

Article Biochemistry & Molecular Biology

Structural Mechanism of Substrate RNA Recruitment in H/ACA RNA-Guided Pseudouridine Synthase

Jingqi Duan et al.

MOLECULAR CELL (2009)

Article Biochemistry & Molecular Biology

Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA

Bo Liang et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Substrate RNA positioning in the archaeal H/ACA ribonucleoprotein complex

Bo Liang et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)

Article Multidisciplinary Sciences

Crystal structure of an H/ACA box ribonucleoprotein particle

Ling Li et al.

NATURE (2006)

Article Biochemistry & Molecular Biology

snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs

Laurent Lestrade et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

A computational screen for mammalian pseudouridylation guide H/ACA RNAs

P Schattner et al.

Article Cell Biology

RNA-Guided RNA modification: functional organization of the archaeal H/ACA RNP

DL Baker et al.

GENES & DEVELOPMENT (2005)

Article Biochemistry & Molecular Biology

Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins

C Wang et al.

EMBO JOURNAL (2004)

Article Biochemistry & Molecular Biology

Genome-wide searching for pseudouridylation guide snoRNAs:: analysis of the Saccharomyces cerevisiae genome

P Schattner et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Human box H/ACA pseudouridylation guide RNA machinery

AM Kiss et al.

MOLECULAR AND CELLULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Mfold web server for nucleic acid folding and hybridization prediction

M Zuker

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine

MI Newby et al.

NATURE STRUCTURAL BIOLOGY (2002)

Article Multidisciplinary Sciences

Investigation of Overhauser effects between pseudouridine and water protons in RNA helices

MI Newby et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)