Related references
Note: Only part of the references are listed.Changes in the Concentration of Trace Elements and Heavy Metals in El Chichon Crater Lake Active Volcano
Betsy Pena-Ocana et al.
POLISH JOURNAL OF ENVIRONMENTAL STUDIES (2021)
The Extremophile Endolithella mcmurdoensis gen. et sp. nov. (Trebouxiophyceae, Chlorellaceae), A New Chlorella-like Endolithic Alga From Antarctica
Teresa P. Martins et al.
JOURNAL OF PHYCOLOGY (2020)
Removal of heavy metals using a novel sulfidogenic AMD treatment system with sulfur reduction: Configuration, performance, critical parameters and economic analysis
Rongrong Sun et al.
ENVIRONMENT INTERNATIONAL (2020)
Thermal evolution of the Crater Lake of Copahue Volcano with ASTER during the last quiescence period between 2000 and 2012 eruptions
Leily Johanna Candela-Becerra et al.
JOURNAL OF VOLCANOLOGY AND GEOTHERMAL RESEARCH (2020)
A Deeper Look into the Biodiversity of the Extremely Acidic Copahue volcano-Rio Agrio System in Neuquen, Argentina
German Lopez Bedogni et al.
MICROORGANISMS (2020)
Role of biogenic Fe(III) minerals as a sink and carrier of heavy metals in the Rio Tinto, Spain
Sergey M. Abramov et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2020)
Recent Advances in Metabolic Pathways of Sulfate Reduction in Intestinal Bacteria
Ivan Kushkevych et al.
CELLS (2020)
Microbial Consortiums of Hydrogenotrophic Methanogenic Mixed Cultures in Lab-Scale Ex-Situ Biogas Upgrading Systems under Different Conditions of Temperature, pH and CO
Jun Xu et al.
MICROORGANISMS (2020)
Comparative Analysis of Microbial Diversity Across Temperature Gradients in Hot Springs From Yellowstone and Iceland
Peter T. Podar et al.
FRONTIERS IN MICROBIOLOGY (2020)
Meta-Analysis of Microbial Communities in Hot Springs: Recurrent Taxa and Complex Shaping Factors beyond pH and Temperature
Francisco L. Massello et al.
MICROORGANISMS (2020)
SQMtools: automated processing and visual analysis of 'omics data with R and anvi'o
Fernando Puente-Sanchez et al.
BMC BIOINFORMATICS (2020)
Influence of Fe(II) on Sb(III) oxidation and adsorption by MnO2 under acidic conditions
Chengjun Zhang et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2020)
Enhancement of cell growth by uncoupling extracellular electron uptake and oxidative stress production in sediment sulfate-reducing bacteria
Xiao Deng et al.
ENVIRONMENT INTERNATIONAL (2020)
Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens
Bojk A. Berghuis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Shotgun metagenomic sequencing from Manao-Pee cave, Thailand, reveals insight into the microbial community structure and its metabolic potential
Apirak Wiseschart et al.
BMC MICROBIOLOGY (2019)
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang et al.
PEERJ (2019)
Diversity and functional profile of bacterial communities at Lancaster acid mine drainage dam, South Africa as revealed by 16S rRNA gene high-throughput sequencing analysis
Thabile Lukhele et al.
EXTREMOPHILES (2019)
Desulfosporosinus spp. were the most predominant sulfate-reducing bacteria in pilot- and laboratory-scale passive bioreactors for acid mine drainage treatment
Yuya Sato et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2019)
Marine Archaeon Methanosarcina acetivorans Enhances Polyphosphate Metabolism Under Persistent Cadmium Stress
Ricardo Jasso-Chavez et al.
FRONTIERS IN MICROBIOLOGY (2019)
Thermoplasmatales and sulfur-oxidizing bacteria dominate the microbial community at the surface water of a CO2-rich hydrothermal spring located in Tenorio Volcano National Park, Costa Rica
Alejandro Arce-Rodriguez et al.
EXTREMOPHILES (2019)
Structure and Diversity of the Bacterial Communities in the Acid and Thermophilic Crater-Lake of the Volcano El Chichon, Mexico
Clara Ivette Rincon-Molina et al.
GEOMICROBIOLOGY JOURNAL (2019)
Cytoscape Automation: empowering workflow-based network analysis
David Otasek et al.
GENOME BIOLOGY (2019)
The MetaCyc database of metabolic pathways and enzymes
Ron Caspi et al.
NUCLEIC ACIDS RESEARCH (2018)
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
Christian M. K. Sieber et al.
NATURE MICROBIOLOGY (2018)
An electrogenic redox loop in sulfate reduction reveals a likely widespread mechanism of energy conservation
Americo G. Duarte et al.
NATURE COMMUNICATIONS (2018)
Glycerol metabolism in hypersaline environments
Aharon Oren
ENVIRONMENTAL MICROBIOLOGY (2017)
Bacterial diversity in fumarole environments of the Paricutin volcano, Michoacan (Mexico)
Miguel Medrano-Santillana et al.
EXTREMOPHILES (2017)
Microbial community dynamics in Inferno Crater Lake, a thermally fluctuating geothermal spring
Laura Ward et al.
ISME JOURNAL (2017)
Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research
Andre M. Comeau et al.
MSYSTEMS (2017)
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
Yu-Wei Wu et al.
BIOINFORMATICS (2016)
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2016)
The Pfam protein families database: towards a more sustainable future
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2016)
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
William Walters et al.
MSYSTEMS (2016)
Sulfate reduction in microorganisms - recent advances and biotechnological applications
Christian Rueckert
CURRENT OPINION IN MICROBIOLOGY (2016)
Athalassotoga saccharophila gen. nov., sp nov., isolated from an acidic terrestrial hot spring, and proposal of Mesoaciditogales ord. nov and Mesoaciditogaceae fam. nov in the phylum Thermotogae
Takashi Itoh et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)
Desulfurella amilsii sp nov., a novel acidotolerant sulfur-respiring bacterium isolated from acidic river sediments
Anna P. Florentino et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)
Sulfur speciation with high performance liquid chromatography as a tool for El Chichon volcano, crater lake monitoring
Ana Silvia Casas et al.
JOURNAL OF SOUTH AMERICAN EARTH SCIENCES (2016)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Comparative study on the production of poly(3-hydroxybutyrate) by thermophilic Chelatococcus daeguensis TAD1: a good candidate for large-scale production
Fuqian Xu et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
STAMP: statistical analysis of taxonomic and functional profiles
Donovan H. Parks et al.
BIOINFORMATICS (2014)
Microbial diversity in Los Azufres geothermal field (Michoacan, Mexico) and isolation of representative sulfate and sulfur reducers
Elcia M. S. Brito et al.
EXTREMOPHILES (2014)
Hydrogeochemical surveillance at El Chichon volcano crater lake, Chiapas, Mexico
Maria Aurora Arrnienta et al.
JOURNAL OF VOLCANOLOGY AND GEOTHERMAL RESEARCH (2014)
Draft Genome Sequence of the Sulfolobales Archaeon AZ1, Obtained through Metagenomic Analysis of a Mexican Hot Spring
Luis E. Servin-Garciduenas et al.
GENOME ANNOUNCEMENTS (2014)
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
James J. Kozich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Hydrogeochemical dynamics affecting steam-heated pools at El Chichon Crater (Chiapas - Mexico)
E. Cuoco et al.
GEOFLUIDS (2013)
Acidithiobacillus ferridurans sp nov., an acidophilic iron-, sulfur- and hydrogen-metabolizing chemolithotrophic gammaproteobacterium
Sabrina Hedrich et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Activation of Methanogenesis by Cadmium in the Marine Archaeon Methanosarcina acetivorans
Elizabeth Lira-Silva et al.
PLOS ONE (2012)
Microbial Diversity in Anaerobic Sediments at Rio Tinto, a Naturally Acidic Environment with a High Heavy Metal Content
Irene Sanchez-Andrea et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
Quality control and preprocessing of metagenomic datasets
Robert Schmieder et al.
BIOINFORMATICS (2011)
Tracing thermal aquifers of El Chichon volcano-hydrothermal (Mexico) with 87Sr/86Sr, Ca/Sr and REE
L. Peiffer et al.
JOURNAL OF VOLCANOLOGY AND GEOTHERMAL RESEARCH (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Metagenomes from High-Temperature Chemotrophic Systems Reveal Geochemical Controls on Microbial Community Structure and Function
William P. Inskeep et al.
PLOS ONE (2010)
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
Heiko Neuweger et al.
BMC Systems Biology (2009)
Thermophilic bacterium Caldimonas taiwanensis produces poly(3-hydroxybutyrate-co-3-hydroxyvalerate) from starch and valerate as carbon sources
Der-Shyan Sheu et al.
ENZYME AND MICROBIAL TECHNOLOGY (2009)
A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes
Yuzhen Ye et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
The Iron Isotope Fingerprints of Redox and Biogeochemical Cycling in Modern and Ancient Earth
Clark M. Johnson et al.
Annual Review of Earth and Planetary Sciences (2008)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Natural pollution caused by the extremely acidic crater Lake Kawah Ijen, East Java, Indonesia
AJ Lohr et al.
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2005)
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
D Laslett et al.
NUCLEIC ACIDS RESEARCH (2004)
Hydrogenothermus marinus gen. nov., sp nov., a novel thermophilic hydrogen-oxidizing bacterium, recognition of Calderobacterium hydrogenophilum as a member of the genus Hydrogenobacter and proposal of the reclassification of Hydrogenobacter acidophilus as Hydrogenobaculum acidophilum gen. nov., comb. nov., in the phylum 'Hydrogenobacter/Aquifex'
R Stöhr et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2001)