Comparison of feature selection methods for mapping soil organic matter in subtropical restored forests

Mapping Soil organic matter (SOM) over a complex forest landscape is challenging due to the difficulty in selecting the most insightful variables from high-dimensional datasets in the recent explosion of geospatial-data. Feature selection (FS) is necessary to reduce data redundancy and noise as well as to achieve more reliable SOM spatial predictions. However, it is still unclear that which is most effective among various FS methods in mapping SOM. Therefore, four types of FS approaches (i.e., filter, wrapper, embedded and ensemble) were adopted to generate optimum variable subsets from an original variable dataset of 60 candidates, respectively, for mapping SOM of restored forest land in a typical subtropical region of southern China. The most used methods for each type of FS approaches were selected in this study, including three filters (Chi-square, InfoGain and pearson correlation analysis), three wrappers (genetic algorithm, simulated annealing algorithm and support vector machine-recursive feature elimination) and three embedded methods (Boruta, random forest (RF) and extreme gradient boosting (XGBoost)), as well as an ensemble method (robust rank aggreg algorithm (RRA)). Meanwhile, the RF and XGBoost models were applied with a 10-fold cross-validation method to compare the relative advantages of the different FS methods in SOM mapping, by utilizing the correlation coefficients R2 between observed and predicted values and predicting errors of root mean square error (RMSE). The results show that the SOM prediction accuracies with optimized variable subsets generated by the different FS methods are better than those with full variables, yet the improvements of prediction performance are different among the four types of FS approaches. The ensemble method (RRA) is superior to the other three types of approaches with an average RMSE reduction of 9.16% comparing to that without using FS methods, followed by wrapper and embedded methods which obtained the average RMSE reduction by 7.81%, 7.32%, respectively, and the filter methods are the weakest in the RMSE reduction with slight decreases of 4.32%. The XGBoost model achieved a better performance in predicting SOM than the RF model regardless of input variables, and the XGBoost model combined with RRA FS method shows the greatest potential to map SOM in the restored forest land. This study provides a reference for obtaining more parsimonious and robust variable sets from the available big geo-data freely for soil mapping in other areas.

Automated summary

This study investigates various feature selection methods for mapping soil organic matter (SOM) in restored forest land and finds that the ensemble method performs the best in improving prediction accuracy.