4.7 Article

Type 2 Diabetes Partitioned Polygenic Scores Associate With Disease Outcomes in 454,193 Individuals Across 13 Cohorts

Journal

DIABETES CARE
Volume 45, Issue 3, Pages 674-683

Publisher

AMER DIABETES ASSOC
DOI: 10.2337/dc21-1395

Keywords

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Funding

  1. National Institutes of Health (NIH) [N01-AG-1-2100, HHSN271201200022C]
  2. Intramural Research Program, Hjartavernd (the Icelandic Heart Association)
  3. Althingi (the Icelandic Parliament)
  4. Icelandic Centre for Research [184845-051]
  5. National Heart, Lung, and Blood Institute (NHLB)
  6. Department of Health and Human Services [HHSN268201700001I, HHSN268201700002I, HHSN268201700003I, HHSN268201700004I, HHSN268201700005I, R01HL087641, R01HL059367, R01HL086694]
  7. National Human Genome Research Institute (NHGRI) [U01HG004402]
  8. NIH [HHSN268200625226C, UL1RR025005]
  9. National Institutes of Health Roadmap for Medical Research
  10. Andrea and Charles Bronfman Philanthropies
  11. NHLBI [X01HL134588, R01HL142302, HHSN268201500001I, N01-HC-25195, R01 HL151855, N02-HL-64278]
  12. NHGRI [U01HG007417, R56HG010297]
  13. NIH NIDDK [R01DK127139, R56DK126930, K23DK107908, R01DK 110113, R01DK107786, R03DK118305]
  14. Ministry of Health, Welfare and Sport of the Netherlands
  15. National Institute for Public Health and the Environment
  16. Affymetrix, Inc. [N02-HL-6-4278]
  17. NIDDK [DK078616, U01 DK0 78616, UM1 DK078616, K23DK114551]
  18. NIGMS [T32GM074905]
  19. NIH NBLBI [HL054457, HL054464, HL054481, HL087660, HL119443]
  20. NIA [N01-AG-6-2101, N01-AG-6-2103, N01-AG-6-2106, R01-AG028050]
  21. National Institute of Nursing Research [R01-NR012459]
  22. Intramural Research Program of the NIH, NIA
  23. American Diabetes Association Innovative and Clinical Translational Award [1-19-ICTS-068]
  24. NHGRI, grant FAIN [U01HG011723]
  25. NIDDK Pathway [K99DK127196]
  26. Doris Duke Charitable Foundation [2020096]
  27. NHLBI in collaboration
  28. MESA investigators
  29. MESA [75N92020D00001, HHSN268201500003I, N01-HC-95159, 75N920 20D00005, N01-HC-95160, 75N92020D00002, N01-HC-95161, 75N92020D00003, N01-HC-95 162]
  30. National Center for Advancing Translational Sciences [UL1-TR-000040, UL1TR-001079, UL1-TR-001420]
  31. National Center for Advancing Translational Sciences, Clinical and Translational Science Institute CTSI [UL1TR001881]
  32. NIDDK Diabetes Research Center [DK063491]
  33. Centre National de G~enotypage (Paris, France)
  34. Jean-Francois Deleuze
  35. Board of Directors of the Leiden University Medical Center
  36. Leiden University, Research Profile Area Vascular and Regenerative Medicine
  37. Dutch Science Organization [916.14.023]
  38. Netherlands Heart Foundation [2001 D 032]
  39. Seventh Framework Program of the European commission [223004]
  40. Netherlands Genomics Initiative [050-060-810]
  41. Erasmus MC and Erasmus University Rotterdam
  42. Netherlands Organisation for Scientific Research (NWO)
  43. Netherlands Organisation for Health Research and Development (ZonMW)
  44. Research Institute for Diseases in the Elderly (RIDE)
  45. Netherlands Genomics Initiative
  46. Ministry of Education
  47. Culture and Science
  48. Ministry of Health
  49. Welfare and Sports
  50. European Commission (DG XII)
  51. Municipality of Rotterdam
  52. Bristol-Myers Squibb
  53. The MESA [75N92020D00006, N01-HC-95163, 75N 92020D00004, N01-HC-95164, 75N92020D0 0007, N01-HC-95165, N01-HC-95166, N01-HC95167, N01-HC-95168, N01-HC-95169]

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This study finds that the genetic basis of type 2 diabetes (T2D) is closely related to the clinical characteristics and outcomes of patients.
OBJECTIVE Type 2 diabetes (T2D) has heterogeneous patient clinical characteristics and outcomes. In previous work, we investigated the genetic basis of this heterogeneity by clustering 94 T2D genetic loci using their associations with 47 diabetes-related traits and identified five clusters, termed beta-cell, proinsulin, obesity, lipodystrophy, and liver/lipid. The relationship between these clusters and individual-level metabolic disease outcomes has not been assessed. RESEARCH DESIGN AND METHODS Here we constructed individual-level partitioned polygenic scores (pPS) for these five clusters in 12 studies from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium and the UK Biobank (n = 454,193) and tested for cross-sectional association with T2D-related outcomes, including blood pressure, renal function, insulin use, age at T2D diagnosis, and coronary artery disease (CAD). RESULTS Despite all clusters containing T2D risk-increasing alleles, they had differential associations with metabolic outcomes. Increased obesity and lipodystrophy cluster pPS, which had opposite directions of association with measures of adiposity, were both significantly associated with increased blood pressure and hypertension. The lipodystrophy and liver/lipid cluster pPS were each associated with CAD, with increasing and decreasing effects, respectively. An increased liver/lipid cluster pPS was also significantly associated with reduced renal function. The liver/lipid cluster includes known loci linked to liver lipid metabolism (e.g., GCKR, PNPLA3, and TM6SF2), and these findings suggest that cardiovascular disease risk and renal function may be impacted by these loci through their shared disease pathway. CONCLUSIONS Our findings support that genetically driven pathways leading to T2D also predispose differentially to clinical outcomes.

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