4.7 Article

Cross-species transcriptomic analyses reveals common and opposite responses in Arabidopsis, rice and barley following oxidative stress and hormone treatment

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Oxidative stress response and programmed cell death guided by NAC013 modulate pithiness in radish taproots

Nam Hoang et al.

Summary: Radish is an important root crop that can be used as a model for studying the molecular basis of agronomic traits. This study identified the molecular basis of pithiness in radish roots through transcriptomics and genotype analysis, revealing candidate genes responsible for this trait.

PLANT JOURNAL (2022)

Review Plant Sciences

Molecular mechanisms involved in functional macroevolution of plant transcription factors

Facundo Romani et al.

Summary: Transcription factors play a crucial role in plant evolution, with changes in body plan and physiological responses driving their functional evolution. Some gene regulatory networks are highly conserved, while others emerge in specific lineages. Recent studies offer new insights into the functional evolution of transcription factors.

NEW PHYTOLOGIST (2021)

Article Plant Sciences

RNA-seq analysis of laser microdissected Arabidopsis thaliana leaf epidermis, mesophyll and vasculature defines tissue-specific transcriptional responses to multiple stress treatments

Oliver Berkowitz et al.

Summary: The research investigated the transcriptomes of different leaf tissues in Arabidopsis under various stress pathways, revealing a decrease in the overall number of expressed genes in response to stress stimuli. While no common stress response was identified, there was overlap of differentially expressed genes between tissues for individual treatments. Specific analysis indicated an interaction between auxin and ethylene in mediating retrograde signaling during mitochondrial dysfunction in the epidermis.

PLANT JOURNAL (2021)

Article Multidisciplinary Sciences

RGF1 controls root meristem size through ROS signalling

Masashi Yamada et al.

NATURE (2020)

Article Plant Sciences

How Plants Sense and Respond to Stressful Environments(1)([OPEN])

Jasper Lamers et al.

PLANT PHYSIOLOGY (2020)

Article Multidisciplinary Sciences

The pan-genome effector-triggered immunity landscape of a host-pathogen interaction

Bradley Laflamme et al.

SCIENCE (2020)

Review Plant Sciences

Exploiting Broad-Spectrum Disease Resistance in Crops: From Molecular Dissection to Breeding

Wei Li et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 71, 2020 (2020)

Article Biochemistry & Molecular Biology

Compensation of Mutation in Arabidopsis glutathione transferase (AtGSTU) Genes under Control or Salt Stress Conditions

Edit Horvath et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Editorial Material Plant Sciences

Plant signaling in biotic and abiotic stress

Scott Peck et al.

JOURNAL OF EXPERIMENTAL BOTANY (2020)

Article Plant Sciences

Emerging from the darkness: interplay between light and plastid signaling during chloroplast biogenesis

Tamara Hernandez-Verdeja et al.

PHYSIOLOGIA PLANTARUM (2020)

Article Plant Sciences

High temperatures modify plant responses to abiotic stress conditions

Damian Balfagon et al.

PHYSIOLOGIA PLANTARUM (2020)

Article Plant Sciences

Chloroplasts in C3 grasses move in response to blue-light

Weronika Krzeszowiec et al.

PLANT CELL REPORTS (2020)

Article Biochemistry & Molecular Biology

The trihelix transcription factor OsGTγ-2 is involved adaption to salt stress in rice

Xiaoshuang Liu et al.

PLANT MOLECULAR BIOLOGY (2020)

Article Biochemistry & Molecular Biology

A novel Ca2+-binding protein that can rapidly transduce auxin responses during root growth

Ora Hazak et al.

PLOS BIOLOGY (2019)

Review Plant Sciences

Surviving in a Hostile World: Plant Strategies to Resist Pests and Diseases

Samuel W. Wilkinson et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 57, 2019 (2019)

Review Plant Sciences

Advances in the development and use of DREB for improved abiotic stress tolerance in transgenic crop plants

Tanmoy Sarkar et al.

PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS (2019)

Article Plant Sciences

Roles of Cytosolic Glutamine Synthetases in Arabidopsis Development and Stress Responses

Yuanyuan Ji et al.

PLANT AND CELL PHYSIOLOGY (2019)

Review Plant Sciences

The role of retrograde signals during plant stress responses

Tim Crawford et al.

JOURNAL OF EXPERIMENTAL BOTANY (2018)

Review Plant Sciences

Plant adaptations to the combination of drought and high temperatures

Sara I. Zandalinas et al.

PHYSIOLOGIA PLANTARUM (2018)

Review Plant Sciences

Reactive Oxygen Species in Plant Signaling

Cezary Waszczak et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 69 (2018)

Review Biochemistry & Molecular Biology

Stress responsive mitochondrial proteins in Arabidopsis thaliana

Yan Wang et al.

FREE RADICAL BIOLOGY AND MEDICINE (2018)

Article Biotechnology & Applied Microbiology

Overexpression of OsAP2 and OsWRKY24 in Arabidopsis results in reduction of plant size

Seonghoe Jang et al.

PLANT BIOTECHNOLOGY (2018)

Review Cell Biology

ROS-related redox regulation and signaling in plants

Graham Noctor et al.

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2018)

Article Agronomy

Analysis of Stress Resistance Using Next Generation Techniques

Maxim Messerer et al.

AGRONOMY-BASEL (2018)

Review Plant Sciences

Control of Arabidopsis lateral root primordium boundaries by MYB36

Maria Fernandez-Marcos et al.

NEW PHYTOLOGIST (2017)

Article Biochemistry & Molecular Biology

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

Jinpu Jin et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Plant Sciences

Reactive oxygen species, abiotic stress and stress combination

Feroza K. Choudhury et al.

PLANT JOURNAL (2017)

Article Biochemistry & Molecular Biology

Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis

Yi-Shih Chen et al.

PLANT MOLECULAR BIOLOGY (2017)

Article Multidisciplinary Sciences

A chromosome conformation capture ordered sequence of the barley genome

Martin Mascher et al.

NATURE (2017)

Letter Biotechnology & Applied Microbiology

MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets

Martin Steinegger et al.

NATURE BIOTECHNOLOGY (2017)

Article Biochemical Research Methods

Differential analysis of RNA-seq incorporating quantification uncertainty

Harold Pimentel et al.

NATURE METHODS (2017)

Editorial Material Plant Sciences

Abiotic stress, stress combinations and crop improvement potential

Olivier Loudet et al.

PLANT JOURNAL (2017)

Article Plant Sciences

Translating knowledge about abiotic stress tolerance to breeding programmes

Matthew Gilliham et al.

PLANT JOURNAL (2017)

Article Plant Sciences

The mitochondrial complexome of Arabidopsis thaliana

Jennifer Senkler et al.

PLANT JOURNAL (2017)

Article Plant Sciences

Growth rate correlates negatively with protein turnover in Arabidopsis accessions

Hirofumi Ishihara et al.

PLANT JOURNAL (2017)

Article Multidisciplinary Sciences

Nucleoredoxin guards against oxidative stress by protecting antioxidant enzymes

Sophie Kneeshaw et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Arabidopsis ABCG34 contributes to defense against necrotrophic pathogens by mediating the secretion of camalexin

Deepa Khare et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Temperature increase reduces global yields of major crops in four independent estimates

Chuang Zhao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Plant Sciences

JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13

Saghar Ebrahimian-Motlagh et al.

FRONTIERS IN PLANT SCIENCE (2017)

Article Biochemistry & Molecular Biology

Roles of rice PHYTOCHROME-INTERACTING FACTOR-LIKE1 (OsPIL1) in leaf senescence

Yasuhito Sakuraba et al.

PLANT SIGNALING & BEHAVIOR (2017)

Article Multidisciplinary Sciences

Data for characterization of SALK_084889, a T-DNA insertion line of Arabidopsis thaliana

Mingqi Zhou et al.

DATA IN BRIEF (2017)

Editorial Material Plant Sciences

Flooding stress signaling through perturbations in oxygen, ethylene, nitric oxide and light

Laurentius A. C. J. Voesenek et al.

NEW PHYTOLOGIST (2016)

Review Plant Sciences

Stress-triggered redox signalling: what's in pROSpect?

Christine H. Foyer et al.

PLANT CELL AND ENVIRONMENT (2016)

Review Plant Sciences

Learning the Languages of the Chloroplast: Retrograde Signaling and Beyond

Kai Xun Chan et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 67 (2016)

Article Plant Sciences

Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice

Yongchang Liu et al.

JOURNAL OF PLANT RESEARCH (2016)

Article Biotechnology & Applied Microbiology

Near-optimal probabilistic RNA-seq quantification

Nicolas L. Bray et al.

NATURE BIOTECHNOLOGY (2016)

Article Biochemistry & Molecular Biology

The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis

Nicholas P. Gladman et al.

PLANT CELL (2016)

Article Biochemistry & Molecular Biology

Mitochondrial Defects Confer Tolerance against Cellulose Deficiency

Zhubing Hu et al.

PLANT CELL (2016)

Article Plant Sciences

The ROS Wheel: Refining ROS Transcriptional Footprints

Patrick Willems et al.

PLANT PHYSIOLOGY (2016)

Review Biochemistry & Molecular Biology

Next generation breeding

Delfina Barabaschi et al.

PLANT SCIENCE (2016)

Article Biochemistry & Molecular Biology

RSAT 2015: Regulatory Sequence Analysis Tools

Alejandra Medina-Rivera et al.

NUCLEIC ACIDS RESEARCH (2015)

Review Plant Sciences

miR408 is involved in abiotic stress responses in Arabidopsis

Chao Ma et al.

PLANT JOURNAL (2015)

Article Plant Sciences

Endogenous Arabidopsis messenger RNAs transported to distant tissues

Christoph J. Thieme et al.

NATURE PLANTS (2015)

Article Biochemistry & Molecular Biology

Mitochondrial Perturbation Negatively Affects Auxin Signaling

Pavel Ivanov Kerchev et al.

MOLECULAR PLANT (2014)

Review Plant Sciences

Abiotic and biotic stress combinations

Nobuhiro Suzuki et al.

NEW PHYTOLOGIST (2014)

Review Biochemical Research Methods

Quantitative analysis of protein turnover in plants

Clark J. Nelson et al.

PROTEOMICS (2014)

Article Biochemistry & Molecular Biology

Cyclin-dependent Kinase E1 (CDKE1) Provides a Cellular Switch in Plants between Growth and Stress Responses

Sophia Ng et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2013)

Article Biochemistry & Molecular Biology

JAV1 Controls Jasmonate-Regulated Plant Defense

Po Hu et al.

MOLECULAR CELL (2013)

Article Biochemistry & Molecular Biology

The barley HvNAC6 transcription factor affects ABA accumulation and promotes basal resistance against powdery mildew

Yan-Jun Chen et al.

PLANT MOLECULAR BIOLOGY (2013)

Article Plant Sciences

Arabidopsis ABCB21 is a Facultative Auxin Importer/Exporter Regulated by Cytoplasmic Auxin Concentration

Yoshihisa Kamimoto et al.

PLANT AND CELL PHYSIOLOGY (2012)

Article Biochemistry & Molecular Biology

The Arabidopsis ubiquitin ligases ATL31 and ATL6 control the defense response as well as the carbon/nitrogen response

Shugo Maekawa et al.

PLANT MOLECULAR BIOLOGY (2012)

Article Multidisciplinary Sciences

Carotenoid oxidation products are stress signals that mediate gene responses to singlet oxygen in plants

Fanny Ramel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Tricking the Guard: Exploiting Plant Defense for Disease Susceptibility

J. Lorang et al.

SCIENCE (2012)

Review Plant Sciences

NAC proteins: regulation and role in stress tolerance

Swati Puranik et al.

TRENDS IN PLANT SCIENCE (2012)

Article Multidisciplinary Sciences

ePlant and the 3D Data Display Initiative: Integrative Systems Biology on the World Wide Web

Geoffrey Fucile et al.

PLOS ONE (2011)

Article Biotechnology & Applied Microbiology

OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants

Feng Gao et al.

PLANT CELL TISSUE AND ORGAN CULTURE (2010)

Article Multidisciplinary Sciences

Distinct cinnamoyl CoA reductases involved in parallel routes to lignin in Medicago truncatula

Rui Zhou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Redox-Dependent Regulation of the Stress-Induced Zinc-Finger Protein SAP12 in Arabidopsis thaliana

Elke Stroher et al.

MOLECULAR PLANT (2009)

Article Biochemistry & Molecular Biology

Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice

Honghong Hu et al.

PLANT MOLECULAR BIOLOGY (2008)

Article Plant Sciences

Approaches to increasing the salt tolerance of wheat and other cereals

R Munns et al.

JOURNAL OF EXPERIMENTAL BOTANY (2006)

Article Biochemistry & Molecular Biology

Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana

R Clifton et al.

PLANT MOLECULAR BIOLOGY (2005)