Related references
Note: Only part of the references are listed.ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
Increased versatility despite reduced molecular complexity: evolution, structure and function of metazoan splicing factor PRPF39
Francesca De Bortoli et al.
NUCLEIC ACIDS RESEARCH (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Annotation-free quantification of RNA splicing using LeafCutter
Yang I. Li et al.
NATURE GENETICS (2018)
IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding
Balint Meszaros et al.
NUCLEIC ACIDS RESEARCH (2018)
Efficient and Accurate Quantitative Profiling of Alternative Splicing Patterns of Any Complexity on a Laptop
Timothy Sterne-Weiler et al.
MOLECULAR CELL (2018)
Origin of exon skipping-rich transcriptomes in animals driven by evolution of gene architecture
Xavier Grau-Bove et al.
GENOME BIOLOGY (2018)
Alternative splicing and the evolution of phenotypic novelty
Stephen J. Bush et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)
Evidence for a Strong Correlation Between Transcription Factor Protein Disorder and Organismic Complexity
Inmaculada Yruela et al.
GENOME BIOLOGY AND EVOLUTION (2017)
STRIDE: Species Tree Root Inference from Gene Duplication Events
David M. Emms et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Comparative transcriptomics of 5 high-altitude vertebrates and their low-altitude relatives
Qianzi Tang et al.
GIGASCIENCE (2017)
Relating protein functional diversity to cell type number identifies genes that determine dynamic aspects of chromatin organisation as potential contributors to organismal complexity
Daniela Lopes Cardoso et al.
PLOS ONE (2017)
Intron retention enhances gene regulatory complexity in vertebrates
Ulf Schmitz et al.
GENOME BIOLOGY (2017)
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
Zuguang Gu et al.
BIOINFORMATICS (2016)
Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks
Endre Sebestyen et al.
GENOME RESEARCH (2016)
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
Minoru Kanehisa et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
Reverse Genomics Predicts Function of Human Conserved Noncoding Elements
Amir Marcovitz et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species' Phenotypic and Genomic Differences
Xavier Prudent et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
A new view of transcriptome complexity and regulation through the lens of local splicing variations
Jorge Vaquero-Garcia et al.
ELIFE (2016)
ggfortify: Unified Interface to Visualize Statistical Results of Popular R Packages
Yuan Tang et al.
R JOURNAL (2016)
RNA splicing factors as oncoproteins and tumour suppressors
Heidi Dvinge et al.
NATURE REVIEWS CANCER (2016)
Why Selection Might Be Stronger When Populations Are Small: Intron Size and Density Predict within and between-Species Usage of Exonic Splice Associated cis-Motifs
XianMing Wu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea et al.
NATURE BIOTECHNOLOGY (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
Genome-wide analysis of alternative splicing in Volvox carteri
Arash Kianianmomeni et al.
BMC GENOMICS (2014)
Correcting for Differential Transcript Coverage Reveals a Strong Relationship between Alternative Splicing and Organism Complexity
Lu Chen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Comparative analysis of the transcriptome across distant species
Mark B. Gerstein et al.
NATURE (2014)
Context-dependent control of alternative splicing by RNA-binding proteins
Xiang-Dong Fu et al.
NATURE REVIEWS GENETICS (2014)
The locust genome provides insight into swarm formation and long-distance flight
Xianhui Wang et al.
NATURE COMMUNICATIONS (2014)
The number of cell types, information content, and the evolution of complex multicellularity
Karl J. Niklas et al.
ACTA SOCIETATIS BOTANICORUM POLONIAE (2014)
Assessment of transcript reconstruction methods for RNA-seq
Tamara Steijger et al.
NATURE METHODS (2013)
The evolution, impact and properties of exonic splice enhancers
Eva Fernandez Caceres et al.
GENOME BIOLOGY (2013)
The C-value paradox, junk DNA and ENCODE
Sean R. Eddy
CURRENT BIOLOGY (2012)
Changes in exon-intron structure during vertebrate evolution affect the splicing pattern of exons
Sahar Gelfman et al.
GENOME RESEARCH (2012)
Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues
Jason Merkin et al.
SCIENCE (2012)
The Evolutionary Landscape of Alternative Splicing in Vertebrate Species
Nuno L. Barbosa-Morais et al.
SCIENCE (2012)
SpliceTrap: a method to quantify alternative splicing under single cellular conditions
Jie Wu et al.
BIOINFORMATICS (2011)
Genome-wide analysis of alternative splicing in Caenorhabditis elegans
Arun K. Ramani et al.
GENOME RESEARCH (2011)
The developmental transcriptome of Drosophila melanogaster
Brenton R. Graveley et al.
NATURE (2011)
The relationship between proteome size, structural disorder and organism complexity
Eva Schad et al.
GENOME BIOLOGY (2011)
Genome-Wide Phylogenetic Comparative Analysis of Plant Transcriptional Regulation: A Timeline of Loss, Gain, Expansion, and Correlation with Complexity
Daniel Lang et al.
GENOME BIOLOGY AND EVOLUTION (2010)
Expansion of the eukaryotic proteome by alternative splicing
Timothy W. Nilsen et al.
NATURE (2010)
Unconstrained mining of transcript data reveals increased alternative splicing complexity in the human transcriptome
I. G. Mollet et al.
NUCLEIC ACIDS RESEARCH (2010)
Noisy Splicing Drives mRNA Isoform Diversity in Human Cells
Joseph K. Pickrell et al.
PLOS GENETICS (2010)
Impacts of protein-protein interaction domains on organism and network complexity
Kai Xia et al.
GENOME RESEARCH (2008)
Alternative isoform regulation in human tissue transcriptomes
Eric T. Wang et al.
NATURE (2008)
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
Qun Pan et al.
NATURE GENETICS (2008)
Tissue-specific splicing factor gene expression signatures
Ana Rita Grosso et al.
NUCLEIC ACIDS RESEARCH (2008)
The effect of intron length on exon creation ratios during the evolution of mammalian genomes
Meenakshi Roy et al.
RNA (2008)
Different levels of alternative splicing among eukaryotes
Eddo Kim et al.
NUCLEIC ACIDS RESEARCH (2007)
Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns
Colin N. Dewey et al.
BMC GENOMICS (2006)
The architecture of pre-mRNAs affects mechanisms of splice-site pairing
KL Fox-Walsh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Variation in sequence and organization of splicing regulatory elements in vertebrate genes
G Yeo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Variation in alternative splicing across human tissues
G Yeo et al.
GENOME BIOLOGY (2004)
Selection for short introns in highly expressed genes
CI Castillo-Davis et al.
NATURE GENETICS (2002)
Alternative splicing and genome complexity
D Brett et al.
NATURE GENETICS (2002)
Share Paper
