4.7 Article

Genome-wide association study reveals 14 new SNPs and confirms two structural variants highly associated with the horned/polled phenotype in goats

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Genomic Analysis Revealed a Convergent Evolution of LINE-1 in Coat Color: A Case Study in Water Buffaloes (Bubalus bubalis)

Dong Liang et al.

Summary: This study revealed that a 2,809-bp-long LINE-1 insertion in the ASIP gene is the causative mutation for the white coat phenotype in swamp buffalo. This LINE-1 insertion acts as a strong proximal promoter leading to increased transcription of ASIP, which prevents melanocyte maturation and results in absence of pigment in white buffalo skin and hairs. Phylogenetic analyses suggest the white buffalo-specific ASIP allele originated from a recent genetic transposition event. Furthermore, a similar LINE-1 insertion was identified in the cattle ASIP gene, indicating a convergent mechanism of coat color evolution in the Bovini tribe.

MOLECULAR BIOLOGY AND EVOLUTION (2021)

Article Genetics & Heredity

Optimized Genetic Testing for Polledness in Multiple Breeds of Cattle

Imtiaz A. S. Randhawa et al.

G3-GENES GENOMES GENETICS (2020)

Review Agriculture, Dairy & Animal Science

Understanding the effects of the bovine POLLED variants

J. E. Aldersey et al.

ANIMAL GENETICS (2020)

Article Multidisciplinary Sciences

Genetic basis of ruminant headgear and rapid antler regeneration

Yu Wang et al.

SCIENCE (2019)

Article Agriculture, Dairy & Animal Science

Evaluation of alternatives to cautery disbudding of dairy goat kids using physiological measures of immediate and longer-term pain

Melissa N. Hempstead et al.

JOURNAL OF DAIRY SCIENCE (2018)

Article Agriculture, Dairy & Animal Science

Genomic prediction of the polled and horned phenotypes in Merino sheep

Naomi Duijvesteijn et al.

GENETICS SELECTION EVOLUTION (2018)

Article Agriculture, Dairy & Animal Science

Behavioural response of dairy goat kids to cautery disbudding

Melissa N. Hempstead et al.

APPLIED ANIMAL BEHAVIOUR SCIENCE (2017)

Letter Biotechnology & Applied Microbiology

Production of hornless dairy cattle from genome-edited cell lines

Daniel F. Carlson et al.

NATURE BIOTECHNOLOGY (2016)

Article Agriculture, Dairy & Animal Science

A 1.8-kb insertion in the 3-UTR of RXFP2 is associated with polledness in sheep

Natalie Wiedemar et al.

ANIMAL GENETICS (2015)

Article Psychology, Biological

Cortisol and pain-related behavior in disbudded goat kids with and without cornual nerve block

L. Alvarez et al.

PHYSIOLOGY & BEHAVIOR (2015)

Article Multidisciplinary Sciences

Core questions in domestication research

Melinda A. Zeder

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

FOXL2 Is a Female Sex-Determining Gene in the Goat

Laurent Boulanger et al.

CURRENT BIOLOGY (2014)

Article Agriculture, Dairy & Animal Science

Genetic diversity and investigation of polledness in divergent goat populations using 52088 SNPs

James W. Kijas et al.

ANIMAL GENETICS (2013)

Article Biochemical Research Methods

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Helga Thorvaldsdottir et al.

BRIEFINGS IN BIOINFORMATICS (2013)

Article Genetics & Heredity

GCTA: A Tool for Genome-wide Complex Trait Analysis

Jian Yang et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2011)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Genomic inflation factors under polygenic inheritance

Jian Yang et al.

EUROPEAN JOURNAL OF HUMAN GENETICS (2011)

Article Biochemistry & Molecular Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna et al.

GENOME RESEARCH (2010)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Somatic Sex Reprogramming of Adult Ovaries to Testes by FOXL2 Ablation

N. Henriette Uhlenhaut et al.

Article Audiology & Speech-Language Pathology

Gene expression analysis of human otosclerotic stapedial footplates

Megan Ealy et al.

HEARING RESEARCH (2008)

Article Genetics & Heredity

PLINK: A tool set for whole-genome association and population-based linkage analyses

Shaun Purcell et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2007)

Review Veterinary Sciences

Dehorning and disbudding distress and its alleviation in calves

KJ Stafford et al.

VETERINARY JOURNAL (2005)

Article Genetics & Heredity

A 11.7-kb deletion triggers intersexuality and polledness in goats

E Pailhoux et al.

NATURE GENETICS (2001)