4.7 Article

STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Human pathways in animal models: possibilities and limitations

Nadezhda T. Doncheva et al.

Summary: Animal models are vital for studying molecular pathways in human diseases, but the conservation of tissue expression between species is still unclear. By comparing tissue expression data in animal models, we can identify pathways that are more consistent with human pathways. While mouse data is more comprehensive, differences among species should be considered when studying pathway activity.

NUCLEIC ACIDS RESEARCH (2021)

Article Computer Science, Artificial Intelligence

Contextualized Protein-Protein Interactions

Anthony Federico et al.

Summary: In this study, a resource for disease- and tissue-relevant protein-protein interactions was provided through data mining, contributing to the reconstruction and analysis of disease-centric molecular interaction networks. This resource is expected to be of interest to a wide audience of researchers in the life sciences.

PATTERNS (2021)

Article Biochemical Research Methods

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

Jinhyuk Lee et al.

BIOINFORMATICS (2020)

Review Biochemical Research Methods

Navigating the disease landscape: knowledge representations for contextualizing molecular signatures

Mansoor Saqi et al.

BRIEFINGS IN BIOINFORMATICS (2019)

Article Computer Science, Theory & Methods

Big data in healthcare: management, analysis and future prospects

Sabyasachi Dash et al.

JOURNAL OF BIG DATA (2019)

Article Biotechnology & Applied Microbiology

Context-specific interactions in literature-curated protein interaction databases

R. Greg Stacey et al.

BMC GENOMICS (2018)

Article Biochemistry & Molecular Biology

From word models to executable models of signaling networks using automated assembly

Benjamin M. Gyori et al.

MOLECULAR SYSTEMS BIOLOGY (2017)

Article Biochemical Research Methods

Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment

Daniel Domingo-Fernandez et al.

BIOINFORMATICS (2017)

Article Biochemical Research Methods

Automatic semantic classification of scientific literature according to the hallmarks of cancer

Simon Baker et al.

BIOINFORMATICS (2016)

Article Biochemical Research Methods

An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition

George Tsatsaronis et al.

BMC BIOINFORMATICS (2015)

Article Computer Science, Hardware & Architecture

Wikidata: A Free Collaborative Knowledgebase

Denny Vrandecic et al.

COMMUNICATIONS OF THE ACM (2014)

Article Computer Science, Artificial Intelligence

DBpedia - A crystallization point for the Web of Data

Christian Bizer et al.

JOURNAL OF WEB SEMANTICS (2009)