4.7 Article

Allele-specific epigenetic activity in prostate cancer and normal prostate tissue implicates prostate cancer risk mechanisms

Related references

Note: Only part of the references are listed.
Article Genetics & Heredity

Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction

David Conti et al.

Summary: The study identified 86 new genetic risk variants associated with prostate cancer, bringing the total known risk variants to 269. The top genetic risk score decile showed different odds ratios for men of European, African, and East Asian ancestries, highlighting the role of germline variation and providing a potential approach for personalized risk prediction.

NATURE GENETICS (2021)

Article Genetics & Heredity

Prostate cancer reactivates developmental epigenomic programs during metastatic progression

Mark M. Pomerantz et al.

NATURE GENETICS (2020)

Article Biochemistry & Molecular Biology

Trans Effects on Gene Expression Can Drive Omnigenic Inheritance

Xuanyao Liu et al.

Article Multidisciplinary Sciences

Association of imputed prostate cancer transcriptome with disease risk reveals novel mechanisms

Nima C. Emami et al.

NATURE COMMUNICATIONS (2019)

Article Biochemistry & Molecular Biology

Genome-wide germline correlates of the epigenetic landscape of prostate cancer

Kathleen E. Houlahan et al.

NATURE MEDICINE (2019)

Article Genetics & Heredity

High-resolution genetic mapping of putative causal interactions between regions of open chromatin

Natsuhiko Kumasaka et al.

NATURE GENETICS (2019)

Article Biochemistry & Molecular Biology

PancanQTL: systematic identification of cis-eQTLs and trans-eQTLs in 33 cancer types

Jing Gong et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Genetics & Heredity

Genetic determinants of co-accessible chromatin regions in activated T cells across humans

Rachel E. Gate et al.

NATURE GENETICS (2018)

Article Genetics & Heredity

Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci

Fredrick R. Schumacher et al.

NATURE GENETICS (2018)

Article Multidisciplinary Sciences

Large-scale transcriptome-wide association study identifies new prostate cancer risk regions

Nicholas Mancuso et al.

NATURE COMMUNICATIONS (2018)

Article Biochemistry & Molecular Biology

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse

Shenglin Mei et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemical Research Methods

Allele-specific expression reveals interactions between genetic variation and environment

David A. Knowles et al.

NATURE METHODS (2017)

Article Multidisciplinary Sciences

Acetylated histone variant H2A.Z is involved in the activation of neo-enhancers in prostate cancer

Fatima Valdes-Mora et al.

NATURE COMMUNICATIONS (2017)

Article Genetics & Heredity

Fine-mapping cellular QTLs with RASQUAL and ATAC-seq

Natsuhiko Kumasaka et al.

NATURE GENETICS (2016)

Article Genetics & Heredity

Gene regulatory mechanisms underpinning prostate cancer susceptibility

Thomas Whitington et al.

NATURE GENETICS (2016)

Article Genetics & Heredity

Integrative approaches for large-scale transcriptome-wide association studies

Alexander Gusev et al.

NATURE GENETICS (2016)

Article Multidisciplinary Sciences

Atlas of prostate cancer heritability in European and African-American men pinpoints tissue-specific regulation

Alexander Gusev et al.

NATURE COMMUNICATIONS (2016)

Article Biochemistry & Molecular Biology

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

Sebastian M. Waszak et al.

Article Multidisciplinary Sciences

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje et al.

NATURE (2015)

Article Multidisciplinary Sciences

Cell-of-origin chromatin organization shapes the mutational landscape of cancer

Paz Polak et al.

NATURE (2015)

Article Genetics & Heredity

The androgen receptor cistrome is extensively reprogrammed in human prostate tumorigenesis

Mark M. Pomerantz et al.

NATURE GENETICS (2015)

Article Genetics & Heredity

A gene-based association method for mapping traits using reference transcriptome data

Eric R. Gamazon et al.

NATURE GENETICS (2015)

Article Biochemical Research Methods

WASP: allele-specific software for robust molecular quantitative trait locus discovery

Bryce van de Geijn et al.

NATURE METHODS (2015)

Article Biotechnology & Applied Microbiology

Tools and best practices for data processing in allelic expression analysis

Stephane E. Castel et al.

GENOME BIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Cistrome: an integrative platform for transcriptional regulation studies

Tao Liu et al.

GENOME BIOLOGY (2011)

Article Multidisciplinary Sciences

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer

SA Tomlins et al.

SCIENCE (2005)