4.6 Review

Machine Learning Protocols in Early Cancer Detection Based on Liquid Biopsy: A Survey

Related references

Note: Only part of the references are listed.
Article Automation & Control Systems

Fatigue Detection of Pilots' Brain Through Brains Cognitive Map and Multilayer Latent Incremental Learning Model

Edmond Q. Wu et al.

Summary: This study introduces a DSLMM model and an ATL-SGR method to detect pilots' cognitive states through brain power map, with experimental results showing accurate extraction of probability distributions.

IEEE TRANSACTIONS ON CYBERNETICS (2022)

Article Biochemical Research Methods

Early cancer detection from genome-wide cell-free DNA fragmentation via shuffled frog leaping algorithm and support vector machine

Linjing Liu et al.

Summary: This study examined different machine learning algorithms for early cancer detection and proposed an Adaptive Support Vector Machine (ASVM) method, which showed robust generalization capability on different datasets and significantly enhanced sensitivity for early cancer detection compared to SVM. The proposed ASVM also outperformed Grid Search + SVM and Random Search + SVM in terms of AUC.

BIOINFORMATICS (2021)

Article Automation & Control Systems

Nonparametric Bayesian Prior Inducing Deep Network for Automatic Detection of Cognitive Status

Edmond Q. Wu et al.

Summary: In this article, a gamma deep belief network is proposed to recognize pilots' brain fatigue status by extracting cognitive features and identifying fatigue characteristics. Experimental results show that the model achieves satisfactory results in terms of both recognition accuracy and stability.

IEEE TRANSACTIONS ON CYBERNETICS (2021)

Article Gastroenterology & Hepatology

Noninvasive early diagnosis of intestinal diseases based on artificial intelligence in genomics and microbiome

Weitong Zhang et al.

Summary: The advancement in artificial intelligence and genomics has driven research on intestinal diseases, with new strategies utilizing blood and microbiome data, high-throughput sequencing, and machine learning technologies for more accurate diagnosis.

JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY (2021)

Article Oncology

Association between the nucleosome footprint of plasma DNA and neoadjuvant chemotherapy response for breast cancer

Xu Yang et al.

Summary: The study revealed that cfDNA nucleosome footprints can predict the efficacy of neoadjuvant chemotherapy for breast cancer patients. Responders and nonresponders showed significant differences in coverage depth near TSSs in cfDNA, and TSSs with differential footprints were enriched in various important gene functional pathways.

NPJ BREAST CANCER (2021)

Review Gastroenterology & Hepatology

Role of oncogenic KRAS in the diagnosis, prognosis and treatment of pancreatic cancer

Louis Buscail et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2020)

Article Biochemistry & Molecular Biology

Identifying circulating miRNA biomarkers for early diagnosis and monitoring of lung cancer

Yu-Hang Zhang et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2020)

Article Oncology

Development of a novel liquid biopsy test to diagnose and locate gastrointestinal cancers.

Yuying Wang et al.

JOURNAL OF CLINICAL ONCOLOGY (2020)

Article Nanoscience & Nanotechnology

Cancer diagnosis with DNA molecular computation

Chao Zhang et al.

NATURE NANOTECHNOLOGY (2020)

Article Biochemistry & Molecular Biology

Extracellular Vesicle and Particle Biomarkers Define Multiple Human Cancers

Ayuko Hoshino et al.

Article Cell Biology

CpG-Islands as Markers for Liquid Biopsies of Cancer Patients

Maximilian Sprang et al.

CELLS (2020)

Article Biochemistry & Molecular Biology

Detection and discrimination of intracranial tumors using plasma cell-free DNA methylomes

Farshad Nassiri et al.

NATURE MEDICINE (2020)

Article Multidisciplinary Sciences

Explainable artificial intelligence model to predict acute critical illness from electronic health records

Simon Meyer Lauritsen et al.

NATURE COMMUNICATIONS (2020)

Article Biochemistry & Molecular Biology

Finding new cancer epigenetic and genetic biomarkers from cell-free DNA by combining SALP-seq and machine learning

Shicai Liu et al.

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)

Review Oncology

Circulating tumor DNA and liquid biopsy in oncology

David W. Cescon et al.

NATURE CANCER (2020)

Review Computer Science, Artificial Intelligence

A survey of neural network-based cancer prediction models from microarray data

Maisa Daoud et al.

ARTIFICIAL INTELLIGENCE IN MEDICINE (2019)

Review Genetics & Heredity

Liquid biopsy in breast cancer: A comprehensive review

Sahar Alimirzaie et al.

CLINICAL GENETICS (2019)

Article Oncology

Potential Markers from Serum-Purified Exosomes for Detecting Oral Squamous Cell Carcinoma Metastasis

Cuiping Li et al.

CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION (2019)

Article Oncology

FTIR-based spectrum of salivary exosomes coupled with computational-aided discriminating analysis in the diagnosis of oral cancer

Ayelet Zlotogorski-Hurvitz et al.

JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY (2019)

Article Multidisciplinary Sciences

Early Cancer Detection from Multianalyte Blood Test Results

Ka-Chun Wong et al.

ISCIENCE (2019)

Review Genetics & Heredity

Next-generation sequencing in liquid biopsy: cancer screening and early detection

Ming Chen et al.

HUMAN GENOMICS (2019)

Article Computer Science, Information Systems

Black-Box vs. White-Box: Understanding Their Advantages and Weaknesses From a Practical Point of View

Octavio Loyola-Gonzalez

IEEE ACCESS (2019)

Article Multidisciplinary Sciences

Detection and localization of surgically resectable cancers with a multi-analyte blood test

Joshua D. Cohen et al.

SCIENCE (2018)

Article Biochemistry & Molecular Biology

Increased Plasma Circulating Cell-Free DNA Could Be a Potential Marker for Oral Cancer

Li-Han Lin et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

Article Biochemical Research Methods

Orchid: a novel management, annotation and machine learning framework for analyzing cancer mutations

Clinton L. Cario et al.

BIOINFORMATICS (2018)

Article Computer Science, Theory & Methods

Feature Selection: A Data Perspective

Jundong Li et al.

ACM COMPUTING SURVEYS (2018)

Review Biochemistry & Molecular Biology

Circulating Cell Free Tumor DNA Detection as a Routine Tool for Lung Cancer Patient Management

Julie A. Vendrell et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)

Article Computer Science, Artificial Intelligence

Online feature selection for high-dimensional class-imbalanced data

Peng Zhou et al.

KNOWLEDGE-BASED SYSTEMS (2017)

Review Biochemistry & Molecular Biology

Liquid biopsy: a step forward towards precision medicine in urologic malignancies

Ashley Di Meo et al.

MOLECULAR CANCER (2017)

Article Computer Science, Information Systems

Deep Learning for Health Informatics

Daniele Ravi et al.

IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS (2017)

Review Mathematical & Computational Biology

Involvement of Machine Learning for Breast Cancer Image Classification: A Survey

Abdullah-Al Nahid et al.

COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE (2017)

Review Oncology

Blood-based tumor biomarkers in lung cancer for detection and treatment

Hirva Mamdani et al.

TRANSLATIONAL LUNG CANCER RESEARCH (2017)

Review Oncology

The potential of liquid biopsies for the early detection of cancer

Ellen Heitzer et al.

NPJ PRECISION ONCOLOGY (2017)

Article Oncology

Cancer Statistics, 2016

Rebecca L. Siegel et al.

CA-A CANCER JOURNAL FOR CLINICIANS (2016)

Editorial Material Oncology

Liquid cancer biopsy: the future of cancer detection?

[Anonymous]

LANCET ONCOLOGY (2016)

Review Genetics & Heredity

Liquid Biopsies in Oncology and the Current Regulatory Landscape

Lindsay N. Strotman et al.

MOLECULAR DIAGNOSIS & THERAPY (2016)

News Item Biotechnology & Applied Microbiology

Exosome cancer diagnostic reaches market

Cormac Sheridan

NATURE BIOTECHNOLOGY (2016)

Article Gastroenterology & Hepatology

Liquid biopsy in patients with pancreatic cancer: Circulating tumor cells and cell-free nucleic acids

Taisuke Imamura et al.

WORLD JOURNAL OF GASTROENTEROLOGY (2016)

Review Genetics & Heredity

Circulating Plasma MicroRNAs As Diagnostic Markers for NSCLC

Jinpao Hou et al.

FRONTIERS IN GENETICS (2016)

Review Medicine, General & Internal

Liquid Biopsy in Non-Small Cell Lung Cancer

Miguel A. Molina-Vila et al.

FRONTIERS IN MEDICINE (2016)

Article Computer Science, Artificial Intelligence

Multilayer Perceptron: Architecture Optimization and Training

Hassan Ramchoun et al.

INTERNATIONAL JOURNAL OF INTERACTIVE MULTIMEDIA AND ARTIFICIAL INTELLIGENCE (2016)

Article Computer Science, Information Systems

An empirical analysis of data preprocessing for machine learning-based software cost estimation

Jianglin Huang et al.

INFORMATION AND SOFTWARE TECHNOLOGY (2015)

Article Oncology

miR-Test: A Blood Test for Lung Cancer Early Detection

Francesca Montani et al.

JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE (2015)

Review Multidisciplinary Sciences

Deep learning

Yann LeCun et al.

NATURE (2015)

Review Genetics & Heredity

Accessing Genetic Information with Liquid Biopsies

Xuyu Cai et al.

TRENDS IN GENETICS (2015)

Article Oncology

miR-Test: A Blood Test for Lung Cancer Early Detection

Francesca Montani et al.

JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE (2015)

Review Biochemistry & Molecular Biology

Machine learning applications in cancer prognosis and prediction

Konstantina Kourou et al.

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2015)

Article Computer Science, Hardware & Architecture

A survey on feature selection methods

Girish Chandrashekar et al.

COMPUTERS & ELECTRICAL ENGINEERING (2014)

Article Oncology

Different Exosome Cargo from Plasma/Bronchoalveolar Lavage in Non-Small-Cell Lung Cancer

Marta Rodriguez et al.

GENES CHROMOSOMES & CANCER (2014)

Article Oncology

Liquid Biopsies: Genotyping Circulating Tumor DNA

Luis A. Diaz et al.

JOURNAL OF CLINICAL ONCOLOGY (2014)

Editorial Material Biochemistry & Molecular Biology

Detecting cancer by monitoring circulating tumor DNA

Paul T. Spellman et al.

NATURE MEDICINE (2014)

Article Medicine, General & Internal

Artificial neural networks approach to early lung cancer detection

Krzysztof Gorynski et al.

CENTRAL EUROPEAN JOURNAL OF MEDICINE (2014)

Review Genetics & Heredity

Exosomes in tumor microenvironment influence cancer progression and metastasis

Christoph Kahlert et al.

JOURNAL OF MOLECULAR MEDICINE-JMM (2013)

Review Oncology

Liquid biopsy: monitoring cancer-genetics in the blood

Emily Crowley et al.

NATURE REVIEWS CLINICAL ONCOLOGY (2013)

Article Computer Science, Artificial Intelligence

A Filter Approach to Multiple Feature Construction for Symbolic Learning Classifiers Using Genetic Programming

Kourosh Neshatian et al.

IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION (2012)

Article Computer Science, Software Engineering

Empirical findings on team size and productivity in software development

D. Rodriguez et al.

JOURNAL OF SYSTEMS AND SOFTWARE (2012)

Review Oncology

MicroRNA and cancer

Martin D. Jansson et al.

MOLECULAR ONCOLOGY (2012)

Article Multidisciplinary Sciences

Cancer Progression Mediated by Horizontal Gene Transfer in an In Vivo Model

Catalina Trejo-Becerril et al.

PLOS ONE (2012)

Article Instruments & Instrumentation

Data mining technique for breast cancer detection in thermograms using hybrid feature extraction strategy

Muthu Rama Krishnan Mookiah et al.

QUANTITATIVE INFRARED THERMOGRAPHY JOURNAL (2012)

Review Sport Sciences

Circulating Cell-Free DNA An Up-Coming Molecular Marker in Exercise Physiology

Sarah Breitbach et al.

SPORTS MEDICINE (2012)

Article Computer Science, Artificial Intelligence

Study on the Impact of Partition-Induced Dataset Shift on k-fold Cross-Validation

Jose Garcia Moreno-Torres et al.

IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS (2012)

Article Hematology

Blood platelets contain tumor-derived RNA biomarkers

R. Jonas A. Nilsson et al.

BLOOD (2011)

Article Biochemical Research Methods

Methods for Identifying SNP Interactions: A Review on Variations of Logic Regression, Random Forest and Bayesian Logistic Regression

Carla Chia-Ming Chen et al.

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

A specific miRNA signature in the peripheral blood of glioblastoma patients

Patrick Roth et al.

JOURNAL OF NEUROCHEMISTRY (2011)

Article Computer Science, Interdisciplinary Applications

Regularization Paths for Generalized Linear Models via Coordinate Descent

Jerome Friedman et al.

JOURNAL OF STATISTICAL SOFTWARE (2010)

Review Biochemistry & Molecular Biology

Circulating tumour cells in cancer patients: challenges and perspectives

Klaus Pantel et al.

TRENDS IN MOLECULAR MEDICINE (2010)

Article Biochemistry & Molecular Biology

Tumor Self-Seeding by Circulating Cancer Cells

Mi-Young Kim et al.

Article Medical Laboratory Technology

Circulating Methylated SEPT9 DNA in Plasma Is a Biomarker for Colorectal Cancer

Theo deVos et al.

CLINICAL CHEMISTRY (2009)

Article Multidisciplinary Sciences

Isolation of rare circulating tumour cells in cancer patients by microchip technology

Sunitha Nagrath et al.

NATURE (2007)

Letter Medical Laboratory Technology

The origin of circulating free DNA

Maniesh van der Vaart et al.

CLINICAL CHEMISTRY (2007)

Review Biochemical Research Methods

A review of feature selection techniques in bioinformatics

Yvan Saeys et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

Bias in error estimation when using cross-validation for model selection

S Varma et al.

BMC BIOINFORMATICS (2006)

Article Biochemical Research Methods

Gene selection and classification of microarray data using random forest -: art. no. 3

R Díaz-Uriarte et al.

BMC BIOINFORMATICS (2006)

Review Oncology

Metastasis: a question of life or death

P Mehlen et al.

NATURE REVIEWS CANCER (2006)

Article Computer Science, Software Engineering

A probabilistic model for predicting software development effort

PC Pendharkar et al.

IEEE TRANSACTIONS ON SOFTWARE ENGINEERING (2005)

Article Biochemical Research Methods

Is cross-validation valid for small-sample microarray classification?

UM Braga-Neto et al.

BIOINFORMATICS (2004)

Article Physics, Fluids & Plasmas

Estimating mutual information -: art. no. 066138

A Kraskov et al.

PHYSICAL REVIEW E (2004)

Article Computer Science, Artificial Intelligence

Data preparation for data mining

SC Zhang et al.

APPLIED ARTIFICIAL INTELLIGENCE (2003)

Article Computer Science, Artificial Intelligence

Variance and bias for general loss functions

GM James

MACHINE LEARNING (2003)

Article Computer Science, Artificial Intelligence

Gene selection for cancer classification using support vector machines

I Guyon et al.

MACHINE LEARNING (2002)

Article Medical Laboratory Technology

About the possible origin and mechanism of circulating DNA - Apoptosis and active DNA release

M Stroun et al.

CLINICA CHIMICA ACTA (2001)

Article Computer Science, Software Engineering

Analyzing data sets with missing data: An empirical evaluation of imputation methods and likelihood-based methods

I Myrtveit et al.

IEEE TRANSACTIONS ON SOFTWARE ENGINEERING (2001)

Article Computer Science, Artificial Intelligence

Random forests

L Breiman

MACHINE LEARNING (2001)

Article Multidisciplinary Sciences

Nonlinear dimensionality reduction by locally linear embedding

ST Roweis et al.

SCIENCE (2000)