Related references
Note: Only part of the references are listed.Quantification of Amine- and Alcohol-Containing Metabolites in Saline Samples Using Pre-extraction Benzoyl Chloride Derivatization and Ultrahigh Performance Liquid Chromatography Tandem Mass Spectrometry (UHPLC MS/MS)
Brittany Widner et al.
ANALYTICAL CHEMISTRY (2021)
Metabolite composition of sinking particles differs from surface suspended particles across a latitudinal transect in the South Atlantic
Winifred M. Johnson et al.
LIMNOLOGY AND OCEANOGRAPHY (2020)
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
Takuya Aramaki et al.
BIOINFORMATICS (2020)
Transcriptional response of Emiliania huxleyi under changing nutrient environments in the North Pacific Subtropical Gyre
Harriet Alexander et al.
ENVIRONMENTAL MICROBIOLOGY (2020)
Ectoine from Bacterial and Algal Origin Is a Compatible Solute in Microalgae
Simona Fenizia et al.
MARINE DRUGS (2020)
SciPy 1.0: fundamental algorithms for scientific computing in Python
Pauli Virtanen et al.
NATURE METHODS (2020)
Evidence for contrasting roles of dimethylsulfoniopropionate production in Emiliania huxleyi and Thalassiosira oceanica
Erin L. McParland et al.
NEW PHYTOLOGIST (2020)
Enhanced production of sucrose in the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973
Po-Cheng Lin et al.
SCIENTIFIC REPORTS (2020)
Environmental metabolomics as an ecological indicator: Metabolite profiles in juvenile fish discriminate sites with different nursery habitat qualities
K. L. Goode et al.
ECOLOGICAL INDICATORS (2020)
Investigations of Dimethylglycine, Glycine Betaine, and Ectoine Uptake by a Betaine-Carnitine-Choline Transporter Family Transporter with Diverse Substrate Specificity in Vibrio Species
Gwendolyn J. Gregory et al.
JOURNAL OF BACTERIOLOGY (2020)
Comparative metabolomics analysis of wild and suspension cultured cells (SCC) of seagrass Halodule pinifolia (Miki) Hartog of Cymodoceaceae family
Jeyapragash Danaraj et al.
AQUATIC BOTANY (2020)
Mesozooplankton taurine production and prokaryotic uptake in the northern Adriatic Sea
Elisabeth L. Clifford et al.
LIMNOLOGY AND OCEANOGRAPHY (2020)
Large Diversity in Nitrogen- and Sulfur-Containing Compatible Solute Profiles in Polar and Temperate Diatoms
H. M. Dawson et al.
INTEGRATIVE AND COMPARATIVE BIOLOGY (2020)
Migratory Zooplankton Excreta and Its Influence on Prokaryotic Communities
Amy E. Maas et al.
FRONTIERS IN MARINE SCIENCE (2020)
Potential of temperature- and salinity-driven shifts in diatom compatible solute concentrations to impact biogeochemical cycling within sea ice
Hannah M. Dawson et al.
ELEMENTA-SCIENCE OF THE ANTHROPOCENE (2020)
GToTree: a user-friendly workflow for phylogenomics
Michael D. Lee
BIOINFORMATICS (2019)
Taurine Is a Major Carbon and Energy Source for Marine Prokaryotes in the North Atlantic Ocean off the Iberian Peninsula
Elisabeth L. Clifford et al.
MICROBIAL ECOLOGY (2019)
SAR11 bacteria have a high affinity and multifunctional glycine betaine transporter
Stephen E. Noell et al.
ENVIRONMENTAL MICROBIOLOGY (2019)
Sulfonate-based networks between eukaryotic phytoplankton and heterotrophic bacteria in the surface ocean
Bryndan P. Durham et al.
NATURE MICROBIOLOGY (2019)
Hydroxyl radical scavenging of the compatible solute ectoine generates two N-acetimides
Stefanie Brands et al.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2019)
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
Guillem Salazar et al.
CELL (2019)
Charting the Complexity of the Marine Microbiome through Single-Cell Genomics
Maria G. Pachiadaki et al.
CELL (2019)
The role of differential DMSP production and community composition in predicting variability of global surface DMSP concentrations
Erin L. McParland et al.
LIMNOLOGY AND OCEANOGRAPHY (2019)
Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
Lisa K. Johnson et al.
GIGASCIENCE (2019)
The MAR databases: development and implementation of databases specific for marine metagenomics
Terje Klemetsen et al.
NUCLEIC ACIDS RESEARCH (2018)
Polar marine diatoms likely take up a small fraction of dissolved dimethylsulfoniopropionate relative to bacteria in oligotrophic environments
Michel Lavoie et al.
AQUATIC MICROBIAL ECOLOGY (2018)
Shifting metabolic priorities among key protistan taxa within and below the euphotic zone
Sarah K. Hu et al.
ENVIRONMENTAL MICROBIOLOGY (2018)
Identifying labile DOM components in a coastal ocean through depleted bacterial transcripts and chemical signals
Alexey Vorobev et al.
ENVIRONMENTAL MICROBIOLOGY (2018)
The Ocean Gene Atlas: exploring the biogeography of plankton genes online
Emilie Villar et al.
NUCLEIC ACIDS RESEARCH (2018)
A global ocean atlas of eukaryotic genes
Quentin Carradec et al.
NATURE COMMUNICATIONS (2018)
Glycerol and nitrate utilisation by marine microalgae Nannochloropsis salina and Chlorella sp and associated bacteria during mixotrophic and heterotrophic growth
Nature Poddar et al.
ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2018)
Targeted metabolomics reveals proline as a major osmolyte in the chemolithoautotroph Sulfurimonas denitrificans
Florian Gotz et al.
MICROBIOLOGYOPEN (2018)
Feeding on compatible solutes: A substrate-induced pathway for uptake and catabolism of ectoines and its genetic control by EnuR
Annina Schulz et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Seasonal variation in the copepod gut microbiome in the subtropical North Atlantic Ocean
Katyanne M. Shoemaker et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Crustacean zooplankton release copious amounts of dissolved organic matter as taurine in the ocean
Elisabeth L. Clifford et al.
LIMNOLOGY AND OCEANOGRAPHY (2017)
Metabolic profiling identifies trehalose as an abundant and diurnally fluctuating metabolite in the microalga Ostreococcus tauri
Matthias Hirth et al.
METABOLOMICS (2017)
The metagenomic data life-cycle: standards and best practices
Petra ten Hoopen et al.
GIGASCIENCE (2017)
Microbial Diversity in Extreme Marine Habitats and Their Biomolecules
Annarita Poli et al.
MICROORGANISMS (2017)
Glycerol outflow in Symbiodinium under osmotic and nitrogen stress
Luis P. Suescun-Bolivar et al.
MARINE BIOLOGY (2016)
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2016)
Trimethylated homoserine functions as the major compatible solute in the globally significant oceanic cyanobacterium Trichodesmium
Nadin Pade et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Deciphering ocean carbon in a changing world
Mary Ann Moran et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Identification of mannitol as compatible solute in Gluconobacter oxydans
Nageena Zahid et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2015)
Osmoprotective role of dimethylsulfoniopropionate (DMSP) for estuarine bacterioplankton
Jessie Motard-Cote et al.
AQUATIC MICROBIAL ECOLOGY (2015)
Release of ecologically relevant metabolites by the cyanobacterium Synechococcus elongatusCCMP 1631
Cara L. Fiore et al.
ENVIRONMENTAL MICROBIOLOGY (2015)
Co-evolution of proteins and solutions: protein adaptation versus cytoprotective micromolecules and their roles in marine organisms
Paul H. Yancey et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2015)
Testing the potential ballast role for dimethylsulfoniopropionate in marine phytoplankton: a modeling study
Michel Lavoie et al.
JOURNAL OF PLANKTON RESEARCH (2015)
Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean
Harriet Alexander et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
High Proline Content of Bacteria-Sized Particles in the Western North Pacific and Its Potential as a New Biogeochemical Indicator of Organic Matter Diagenesis
Hiroyuki Takasu et al.
FRONTIERS IN MARINE SCIENCE (2015)
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
Patrick J. Keeling et al.
PLOS BIOLOGY (2014)
Biosynthesis of the Osmoprotectant Ectoine, but Not Glycine Betaine, Is Critical for Survival of Osmotically Stressed Vibrio parahaemolyticus Cells
Serge Y. Ongagna-Yhombi et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Mannitol, a compatible solute synthesized by Acinetobacter baylyi in a two-step pathway including a salt-induced and salt-dependent mannitol-1-phosphate dehydrogenase
Miriam Sand et al.
ENVIRONMENTAL MICROBIOLOGY (2013)
Synchronized Regulation of Different Zwitterionic Metabolites in the Osmoadaption of Phytoplankton
Bjoern Gebser et al.
MARINE DRUGS (2013)
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
Jaina Mistry et al.
NUCLEIC ACIDS RESEARCH (2013)
Cloning, expression and functional characterization of a novel trehalose synthase from marine Pseudomonas sp P8005
Yun Gao et al.
WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2013)
Expressed sequence tag analysis and cloning of trehalose-6-phosphate synthase gene from marine alga Laminaria japonica (Phaeophyta)
Xuan Jinsong et al.
ACTA OCEANOLOGICA SINICA (2012)
The marine cyanobacterium Crocosphaera watsonii WH8501 synthesizes the compatible solute trehalose by a laterally acquired OtsAB fusion protein
Nadin Pade et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters
Timothy J. Williams et al.
ISME JOURNAL (2012)
Engineering ecosystems and synthetic ecologies
Michael T. Mee et al.
MOLECULAR BIOSYSTEMS (2012)
KEGG for integration and interpretation of large-scale molecular data sets
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2012)
Investigations of the Uptake of Dimethylsulfoniopropionate by Phytoplankton
Astrid Spielmeyer et al.
CHEMBIOCHEM (2011)
Compatible solute biosynthesis in cyanobacteria
Stephan Klaehn et al.
ENVIRONMENTAL MICROBIOLOGY (2011)
Osmotically Controlled Synthesis of the Compatible Solute Proline Is Critical for Cellular Defense of Bacillus subtilis against High Osmolarity
Jeanette Brill et al.
JOURNAL OF BACTERIOLOGY (2011)
Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon
Rachel S. Poretsky et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Pilot-scale Production and Viability Analysis of Freeze-Dried Probiotic Bacteria Using Different Protective Agents
Michele Savini et al.
NUTRIENTS (2010)
Biopython: freely available Python tools for computational molecular biology and bioinformatics
Peter J. A. Cock et al.
BIOINFORMATICS (2009)
Isolation of Marine Yeasts Collected from the Pacific Ocean Showing a High Production of γ-Aminobutyric Acid
Kazuaki Masuda et al.
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2008)
Intracellular organic osmolytes: Function and regulation
Maurice B. Burg et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Osmoregulation in anthozoan-dinoflagellate symbiosis
Anderson B. Mayfield et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2007)
Identification of glycine betaine as compatible solute in Synechococcus sp WH8102 and characterization of its N-methyltransferase genes involved in betaine synthesis
Wei-Dong Lu et al.
ARCHIVES OF MICROBIOLOGY (2006)
Low dissolved DMSP concentrations in seawater revealed by small-volume gravity filtration and dialysis sampling
RP Kiene et al.
LIMNOLOGY AND OCEANOGRAPHY-METHODS (2006)
The accumulation of methylamine counteracting solutes in elasmobranchs with differing levels of urea: a comparison of marine and freshwater species
JR Treberg et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2006)
Expression and functional analysis of mussel taurine transporter, as a key molecule in cellular osmoconforming
M Hosoi et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2005)
Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with antarctic assemblages
N Bano et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
The occurrence and distribution of trimethylamine-N-oxide in Antarctic coastal waters
SW Gibb et al.
MARINE CHEMISTRY (2004)
Role of ectoine in Vibrio cholerae osmoadaptation
KJ Pflughoeft et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Nitrogen assimilation and global regulation in Escherichia coli
L Reitzer
ANNUAL REVIEW OF MICROBIOLOGY (2003)
SAR11 clade dominates ocean surface bacterioplankton communities
RM Morris et al.
NATURE (2002)
Unusual organic osmolytes in deep-sea animals: adaptations to hydrostatic pressure and other perturbants
PH Yancey et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2002)
Impact of osmolytes on buoyancy of marine phytoplankton
CM Boyd et al.
MARINE BIOLOGY (2002)
An antioxidant function for DMSP and DMS in marine algae
W Sunda et al.
NATURE (2002)
Osmoadaptation in bacteria and archaea:: common principles and differences
M Roessler et al.
ENVIRONMENTAL MICROBIOLOGY (2001)
Distribution and turnover of dissolved DMSP and its relationship with bacterial production and dimethylsulfide in the Gulf of Mexico
RP Kiene et al.
LIMNOLOGY AND OCEANOGRAPHY (2000)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)
Hypotaurine, N-methyltaurine, taurine, and glycine betaine as dominant osmolytes of vestimentiferan tubeworms from hydrothermal vents and cold seeps
M Yin et al.
PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY (2000)