Related references
Note: Only part of the references are listed.eDNA metabarcoding survey reveals fine-scale coral reef community variation across a remote, tropical island ecosystem
Katrina M. West et al.
MOLECULAR ECOLOGY (2020)
Environmental DNA reveals seasonal shifts and potential interactions in a marine community
Anni Djurhuus et al.
NATURE COMMUNICATIONS (2020)
Large-scale metabarcoding analysis of epipelagic and mesopelagic copepods in the Pacific
Junya Hirai et al.
PLOS ONE (2020)
Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA
Krista M. Ruppert et al.
GLOBAL ECOLOGY AND CONSERVATION (2019)
Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities
Guang K. Zhang et al.
EVOLUTIONARY APPLICATIONS (2018)
Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach
V. G. Fonseca et al.
SCIENTIFIC REPORTS (2017)
SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare?
Monika Balvociute et al.
BMC GENOMICS (2017)
Comparative study of the validity of three regions of the 18S-rRNA gene for massively parallel sequencing-based monitoring of the planktonic eukaryote community
Akifumi S. Tanabe et al.
MOLECULAR ECOLOGY RESOURCES (2016)
Comparison between infaunal communities of the deep floor and edge of the Tonga Trench: Possible effects of differences in organic matter supply
Daniel Leduc et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2016)
Metabarcoding reveals strong spatial structure and temporal turnover of zooplankton communities among marine and freshwater ports
Frederic J. J. Chain et al.
DIVERSITY AND DISTRIBUTIONS (2016)
Deep-sea diversity patterns are shaped by energy availability
Skipton N. C. Woolley et al.
NATURE (2016)
Censusing marine eukaryotic diversity in the twenty-first century
Matthieu Leray et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2016)
Spatio-temporal monitoring of deep-sea communities using metabarcoding of sediment DNA and RNA
Magdalena Guardiola et al.
PEERJ (2016)
Worldwide Analysis of Sedimentary DNA Reveals Major Gaps in Taxonomic Knowledge of Deep-Sea Benthos
Frederic Sinniger et al.
FRONTIERS IN MARINE SCIENCE (2016)
Environmental DNA - An emerging tool in conservation for monitoring past and present biodiversity
Philip Francis Thomsen et al.
BIOLOGICAL CONSERVATION (2015)
Eukaryotic plankton diversity in the sunlit ocean
Colomban de Vargas et al.
SCIENCE (2015)
Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons
Magdalena Guardiola et al.
PLOS ONE (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay
Lucie Bittner et al.
MOLECULAR ECOLOGY (2013)
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Robert C. Edgar
NATURE METHODS (2013)
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
Anna Klindworth et al.
NUCLEIC ACIDS RESEARCH (2013)
PCR Primers for Metazoan Nuclear 18S and 28S Ribosomal DNA Sequences
Ryuji J. Machida et al.
PLOS ONE (2012)
The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna
Cuong Q. Tang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Sequencing our way towards understanding global eukaryotic biodiversity
Holly M. Bik et al.
TRENDS IN ECOLOGY & EVOLUTION (2012)
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
William A. Walters et al.
BIOINFORMATICS (2011)
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoc et al.
BIOINFORMATICS (2011)
Beyond Predictions: Biodiversity Conservation in a Changing Climate
Terence P. Dawson et al.
SCIENCE (2011)
How Many Species Are There on Earth and in the Ocean?
Camilo Mora et al.
PLOS BIOLOGY (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Meiofauna of the western continental shelf of India, Arabian Sea
S. Sajan et al.
ESTUARINE COASTAL AND SHELF SCIENCE (2010)
Global Biodiversity: Indicators of Recent Declines
Stuart H. M. Butchart et al.
SCIENCE (2010)
Second-generation environmental sequencing unmasks marine metazoan biodiversity
Vera G. Fonseca et al.
NATURE COMMUNICATIONS (2010)
Deep, diverse and definitely different: unique attributes of the world's largest ecosystem
E. Ramirez-Llodra et al.
BIOGEOSCIENCES (2010)
A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes
Linda A. Amaral-Zettler et al.
PLOS ONE (2009)
A universal DNA mini-barcode for biodiversity analysis
Isabelle Meusnier et al.
BMC GENOMICS (2008)
Abyssal food limitation, ecosystem structure and climate change
Craig R. Smith et al.
TRENDS IN ECOLOGY & EVOLUTION (2008)
SILVA:: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
Elmar Pruesse et al.
NUCLEIC ACIDS RESEARCH (2007)