Related references
Note: Only part of the references are listed.Unleash multifunctional role of long noncoding RNAs biomarker panel in breast cancer: a predictor classification model
Eman A. Toraih et al.
EPIGENOMICS (2020)
Tissue-specific usage of transposable element-derived promoters in mouse development
Benpeng Miao et al.
GENOME BIOLOGY (2020)
esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis
Zheng Wei et al.
BIOINFORMATICS (2018)
ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
Jianhong Ou et al.
BMC GENOMICS (2018)
The NIEHS TaRGET II Consortium and environmental epigenomics
Ting Wang et al.
NATURE BIOTECHNOLOGY (2018)
ATAC2GRN: optimized ATAC-seq and DNase1-seq pipelines for rapid and accurate genome regulatory network inference
Thomas J. F. Pranzatelli et al.
BMC GENOMICS (2018)
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
M. Ryan Corces et al.
NATURE METHODS (2017)
Modeling gene regulation from paired expression and chromatin accessibility data
Zhana Duren et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Developmental Acquisition of Regulomes Underlies Innate Lymphoid Cell Functionality
Han-Yu Shih et al.
CELL (2016)
A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation
Maninjay K. Atianand et al.
CELL (2016)
Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells
Maud de Dieuleveult et al.
NATURE (2016)
Genetic dissection of the α-globin super-enhancer in vivo
Deborah Hay et al.
NATURE GENETICS (2016)
Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes
Amanda M. Ackermann et al.
MOLECULAR METABOLISM (2016)
Leukemia-Associated Cohesin Mutants Dominantly Enforce Stem Cell Programs and Impair Human Hematopoietic Progenitor Differentiation
Claire Mazumdar et al.
CELL STEM CELL (2015)
Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation
Daofeng Li et al.
METHODS (2015)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
Single-cell chromatin accessibility reveals principles of regulatory variation
Jason D. Buenostro et al.
NATURE (2015)
Transcription factor binding dynamics during human ES cell differentiation
Alexander M. Tsankov et al.
NATURE (2015)
Epigenomic annotation of genetic variants using the Roadmap Epigenome Browser
Xin Zhou et al.
NATURE BIOTECHNOLOGY (2015)
Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos
Hyung Joo Lee et al.
NATURE COMMUNICATIONS (2015)
A comparative encyclopedia of DNA elements in the mouse genome
Feng Yue et al.
NATURE (2014)
Regulatory network decoded from epigenomes of surface ectoderm-derived cell types
Rebecca F. Lowdon et al.
NATURE COMMUNICATIONS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
Bo Zhang et al.
GENOME RESEARCH (2013)
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
Jason D. Buenrostro et al.
NATURE METHODS (2013)
Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data
Jason Piper et al.
NUCLEIC ACIDS RESEARCH (2013)
Predicting cell-type-specific gene expression from regions of open chromatin
Anirudh Natarajan et al.
GENOME RESEARCH (2012)
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Stephen G. Landt et al.
GENOME RESEARCH (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA
Jeremy M. Simon et al.
NATURE PROTOCOLS (2012)
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
Weisheng Wu et al.
GENOME RESEARCH (2011)
The Human Epigenome Browser at Washington University
Xin Zhou et al.
NATURE METHODS (2011)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Dynamic regulation of nucleosome positioning in the human genome
Dustin E. Schones et al.
CELL (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
The human genome browser at UCSC
WJ Kent et al.
GENOME RESEARCH (2002)
Share Paper
