Related references
Note: Only part of the references are listed.Structural biology of the invasion arsenal of Gram-negative bacterial pathogens
Andrey Grishin et al.
FEBS JOURNAL (2022)
Mitochondrial Functions in Infection and Immunity
Varnesh Tiku et al.
TRENDS IN CELL BIOLOGY (2020)
Temporal dynamics of protein complex formation and dissociation during human cytomegalovirus infection
Yutaka Hashimoto et al.
NATURE COMMUNICATIONS (2020)
Bioinformatics Methods for Mass Spectrometry-Based Proteomics Data Analysis
Chen Chen et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)
Defining and Targeting Adaptations to Oncogenic KRASG12C Inhibition Using Quantitative Temporal Proteomics
Naiara Santana-Codina et al.
CELL REPORTS (2020)
Organellar Maps Through Proteomic Profiling - A Conceptual Guide
Georg H. H. Borner
MOLECULAR & CELLULAR PROTEOMICS (2020)
Spatiotemporal proteomics uncovers cathepsin-dependent macrophage cell death during Salmonella infection
Joel Selkrig et al.
NATURE MICROBIOLOGY (2020)
MSstatsTMT: Statistical Detection of Differentially Abundant Proteins in Experiments with Isobaric Labeling and Multiple Mixtures
Ting Huang et al.
MOLECULAR & CELLULAR PROTEOMICS (2020)
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms
David E. Gordon et al.
SCIENCE (2020)
Integrated lipidomics and proteomics network analysis highlights lipid and immunity pathways associated with Alzheimer's disease
Jin Xu et al.
TRANSLATIONAL NEURODEGENERATION (2020)
How Viral and Intracellular Bacterial Pathogens Reprogram the Metabolism of Host Cells to Allow Their Intracellular Replication
Wolfgang Eisenreich et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2019)
Promiscuous Targeting of Cellular Proteins by Vpr Drives Systems-Level Proteomic Remodeling in HIV-1 Infection
Edward J. D. Greenwood et al.
CELL REPORTS (2019)
Quantitative Temporal Proteomic Analysis of Vaccinia Virus Infection Reveals Regulation of Histone Deacetylases by an Interferon Antagonist
Lior Soday et al.
CELL REPORTS (2019)
EPIC: software toolkit for elution profile-based inference of protein complexes
Lucas ZhongMing Hu et al.
NATURE METHODS (2019)
Hyperparameter tuning and performance assessment of statistical and machine-learning algorithms using spatial data
Patrick Schratz et al.
ECOLOGICAL MODELLING (2019)
MAP: model-based analysis of proteomic data to detect proteins with significant abundance changes
Mushan Li et al.
CELL DISCOVERY (2019)
SILAC-based quantitative proteomics using mass spectrometry quantifies endoplasmic reticulum stress in whole HeLa cells
Daniel N. Itzhak et al.
DISEASE MODELS & MECHANISMS (2019)
DEBrowser: interactive differential expression analysis and visualization tool for count data
Alper Kucukural et al.
BMC GENOMICS (2019)
Interplay between host and pathogen: immune defense and beyond
Eun-Kyeong Jo
EXPERIMENTAL AND MOLECULAR MEDICINE (2019)
SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
Lukas Minus Orre et al.
MOLECULAR CELL (2019)
A systematic evaluation of normalization methods in quantitative label-free proteomics
Tommi Valikangas et al.
BRIEFINGS IN BIOINFORMATICS (2018)
Subcellular localization of MC4R with ADCY3 at neuronal primary cilia underlies a common pathway for genetic predisposition to obesity
Jacqueline E. Siljee et al.
NATURE GENETICS (2018)
Proteome-wide identification of ubiquitin interactions using UbIA-MS
Xiaofei Zhang et al.
NATURE PROTOCOLS (2018)
An Innovative Approach for The Integration of Proteomics and Metabolomics Data In Severe Septic Shock Patients Stratified for Mortality
Alice Cambiaghi et al.
SCIENTIFIC REPORTS (2018)
GSimp: A Gibbs sampler based left-censored missing value imputation approach for metabolomics studies
Runmin Wei et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Optimal Hyper-Parameter Tuning of SVM Classifiers With Application to Medical Diagnosis
Alfonso Rojas-Dominguez et al.
IEEE ACCESS (2018)
A Comparative Study of Divisive and Agglomerative Hierarchical Clustering Algorithms
Maurice Roux
JOURNAL OF CLASSIFICATION (2018)
Temporal Proteomic Analysis of Pancreatic β-Cells in Response to Lipotoxicity and Glucolipotoxicity
Zonghong Li et al.
MOLECULAR & CELLULAR PROTEOMICS (2018)
Integrated Proteomics and Lipidomics Investigation of the Mechanism Underlying the Neuroprotective Effect of N-benzylhexadecanamide
Yanyan Zhou et al.
MOLECULES (2018)
In Fungal Intracellular Pathogenesis, Form Determines Fate
Robin C. May et al.
MBIO (2018)
Temporal proteomic profiling of postnatal human cortical development
Michael S. Breen et al.
TRANSLATIONAL PSYCHIATRY (2018)
bnstruct: an R package for Bayesian Network structure learning in the presence of missing data
Alberto Franzin et al.
BIOINFORMATICS (2017)
Targeting the hard to reach: challenges and novel strategies in the treatment of intracellular bacterial infections
Nor Fadhilah Kamaruzzaman et al.
BRITISH JOURNAL OF PHARMACOLOGY (2017)
Insights from protein-protein interaction studies on bacterial pathogenesis
Alla Gagarinova et al.
EXPERT REVIEW OF PROTEOMICS (2017)
Quantitative Temporal in Vivo Proteomics Deciphers the Transition of Virus-Driven Myeloid Cells into M2 Macrophages
Derek R. Clements et al.
JOURNAL OF PROTEOME RESEARCH (2017)
Exploring and Exploiting Proteome Organization during Viral Infection
Pierre M. Jean Beltran et al.
JOURNAL OF VIROLOGY (2017)
Quantitative Temporal Viromics of an Inducible HIV-1 Model Yields Insight to Global Host Targets and Phospho-Dynamics Associated with Protein Vpr
John D. Lapek et al.
MOLECULAR & CELLULAR PROTEOMICS (2017)
Proteomics and integrative omic approaches for understanding host-pathogen interactions and infectious diseases
Pierre M. Jean Beltran et al.
MOLECULAR SYSTEMS BIOLOGY (2017)
POINTS OF SIGNIFICANCE Principal component analysis
Jake Lever et al.
NATURE METHODS (2017)
Generic performance measure for multiclass-classifiers
Thomas Kautz et al.
PATTERN RECOGNITION (2017)
Post-translational Mechanisms of Host Subversion by Bacterial Effectors
Nichollas E. Scott et al.
TRENDS IN MOLECULAR MEDICINE (2017)
Temporal Transcriptomic and Proteomic Landscapes of Deteriorating Pancreatic Islets in Type 2 Diabetic Rats
Junjie Hou et al.
DIABETES (2017)
Functional characterization of the Mycobacterium abscessus genome coupled with condition specific transcriptomics reveals conserved molecular strategies for host adaptation and persistence
Aleksandra A. Miranda-CasoLuengo et al.
BMC GENOMICS (2016)
A Proteomics Approach to the Protein Normalization Problem: Selection of Unvarying Proteins for MS-Based Proteomics and Western Blotting
Jacek R. Wisniewski et al.
JOURNAL OF PROTEOME RESEARCH (2016)
A multi-model statistical approach for proteomic spectral count quantitation
Owen E. Branson et al.
JOURNAL OF PROTEOMICS (2016)
Human Cytomegalovirus Infection Upregulates the Mitochondrial Transcription and Translation Machineries
S. Karniely et al.
MBIO (2016)
Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics
Lisa M. Breckels et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Comparative Proteomics Identifies Host Immune System Proteins Affected by Infection with Mycobacterium bovis
Vladimir Lopez et al.
PLOS NEGLECTED TROPICAL DISEASES (2016)
Global, quantitative and dynamic mapping of protein subcellular localization
Daniel N. Itzhak et al.
ELIFE (2016)
A Portrait of the Human Organelle Proteome In Space and Time during Cytomegalovirus Infection
Pierre M. Jean Beltran et al.
CELL SYSTEMS (2016)
ggfortify: Unified Interface to Visualize Statistical Results of Popular R Packages
Yuan Tang et al.
R JOURNAL (2016)
Clustering Algorithms: Their Application to Gene Expression Data
Jelili Oyelade et al.
BIOINFORMATICS AND BIOLOGY INSIGHTS (2016)
A review of automatic selection methods for machine learning algorithms and hyper-parameter values
Gang Luo
NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS (2016)
Improving Label-Free Quantitative Proteomics Strategies by Distributing Shared Peptides and Stabilizing Variance
Ying Zhang et al.
ANALYTICAL CHEMISTRY (2015)
Cell Surface Proteomic Map of HIV Infection Reveals Antagonism of Amino Acid Metabolism by Vpu and Nef
Nicholas J. Matheson et al.
CELL HOST & MICROBE (2015)
Host-Microbe Protein Interactions during Bacterial Infection
Devin K. Schweppe et al.
CHEMISTRY & BIOLOGY (2015)
Comparative mapping of host-pathogen protein-protein interactions
Priya S. Shah et al.
CURRENT OPINION IN MICROBIOLOGY (2015)
limma powers differential expression analyses for RNA-sequencing and microarray studies
Matthew E. Ritchie et al.
NUCLEIC ACIDS RESEARCH (2015)
A novel validity index with dynamic cut-off for determining true clusters
M. S. Bhargavi et al.
PATTERN RECOGNITION (2015)
Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data
Pengyi Yang et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
mice: Multivariate Imputation by Chained Equations inR
Stef van Buuren et al.
Journal of Statistical Software (2015)
A Comparison Study on Similarity and Dissimilarity Measures in Clustering Continuous Data
Ali Seyed Shirkhorshidi et al.
PLOS ONE (2015)
Fungal Pathogens: Survival and Replication within Macrophages
Andrew S. Gilbert et al.
COLD SPRING HARBOR PERSPECTIVES IN MEDICINE (2015)
A survey of computational tools for downstream analysis of proteomic and other omic datasets
Anis Karimpour-Fard et al.
HUMAN GENOMICS (2015)
A hierarchical statistical modeling approach to analyze proteomic isobaric tag for relative and absolute quantitation data
Cong Zhou et al.
BIOINFORMATICS (2014)
MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments
Meena Choi et al.
BIOINFORMATICS (2014)
Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata
Laurent Gatto et al.
BIOINFORMATICS (2014)
Quantitative Temporal Viromics: An Approach to Investigate Host-Pathogen Interaction
Michael P. Weekes et al.
CELL (2014)
Mechanisms of protein-folding diseases at a glance
Julie S. Valastyan et al.
DISEASE MODELS & MECHANISMS (2014)
Isobaric Labeling-Based Relative Quantification in Shotgun Proteomics
Navin Rauniyar et al.
JOURNAL OF PROTEOME RESEARCH (2014)
A Foundation for Reliable Spatial Proteomics Data Analysis
Laurent Gatto et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Proteogenomics: concepts, applications and computational strategies
Alexey I. Nesvizhskii
NATURE METHODS (2014)
Metabolomics Data Normalization with EigenMS
Yuliya V. Karpievitch et al.
PLOS ONE (2014)
Fuzziness parameter selection in fuzzy c-means: The perspective of cluster validation
Zhou KaiLe et al.
SCIENCE CHINA-INFORMATION SCIENCES (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Missing value imputation for microarray data: a comprehensive comparison study and a web tool
Chia-Chun Chiu et al.
BMC SYSTEMS BIOLOGY (2013)
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
Marie-Agnes Dillies et al.
BRIEFINGS IN BIOINFORMATICS (2013)
The Application of SILAC Mouse in Human Body Fluid Proteomics Analysis Reveals Protein Patterns Associated with IgA Nephropathy
Shilin Zhao et al.
EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE (2013)
Measuring and Managing Ratio Compression for Accurate iTRAQ/TMT Quantification
Mikhail M. Savitski et al.
JOURNAL OF PROTEOME RESEARCH (2013)
Assessment and Improvement of Statistical Tools for Comparative Proteomics Analysis of Sparse Data Sets with Few Experimental Replicates
Veit Schwammle et al.
JOURNAL OF PROTEOME RESEARCH (2013)
The effect of organelle discovery upon sub-cellular protein localisation
L. M. Breckels et al.
JOURNAL OF PROTEOMICS (2013)
Systems- Level Overview of Host Protein Phosphorylation During Shigella flexneri Infection Revealed by Phosphoproteomics
Christoph Schmutz et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Large-scale gene function analysis with the PANTHER classification system
Huaiyu Mi et al.
NATURE PROTOCOLS (2013)
Essentials of the self-organizing map
Teuvo Kohonen
NEURAL NETWORKS (2013)
Application of Machine Learning to Proteomics Data: Classification and Biomarker Identification in Postgenomics Biology
Anna Louise Swan et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2013)
Phosphoproteomic Analysis Implicates the mTORC2-FoxO1 Axis in VEGF Signaling and Feedback Activation of Receptor Tyrosine Kinases
Guanglei Zhuang et al.
SCIENCE SIGNALING (2013)
The prevention and handling of the missing data
Hyun Kang
KOREAN JOURNAL OF ANESTHESIOLOGY (2013)
MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation
Laurent Gatto et al.
BIOINFORMATICS (2012)
A cross-validation scheme for machine learning algorithms in shotgun proteomics
Viktor Granholm et al.
BMC BIOINFORMATICS (2012)
Normalization and missing value imputation for label-free LC-MS analysis
Yuliya V. Karpievitch et al.
BMC BIOINFORMATICS (2012)
Fold change and p-value cutoffs significantly alter microarray interpretations
Mark R. Dalman et al.
BMC BIOINFORMATICS (2012)
Increased Expression of LDL Receptor-Related Protein 1 during Human Cytomegalovirus Infection Reduces Virion Cholesterol and Infectivity
Nicole Gudleski-O'Regan et al.
CELL HOST & MICROBE (2012)
A review of supervised machine learning algorithms and their applications to ecological data
C. Crisci et al.
ECOLOGICAL MODELLING (2012)
Statistical Considerations of Optimal Study Design for Human Plasma Proteomics and Biomarker Discovery
Cong Zhou et al.
JOURNAL OF PROTEOME RESEARCH (2012)
New prognosis biomarkers identified by dynamic proteomic analysis of colorectal cancer
Ya Peng et al.
MOLECULAR BIOSYSTEMS (2012)
KEGG for integration and interpretation of large-scale molecular data sets
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2012)
Subversion of Cell Signaling by Pathogens
Neal M. Alto et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2012)
Biological impact of missing-value imputation on downstream analyses of gene expression profiles
Sunghee Oh et al.
BIOINFORMATICS (2011)
Quantitative Mass Spectrometry Catalogues Salmonella Pathogenicity Island-2 Effectors and Identifies Their Cognate Host Binding Partners
Sigrid D. Auweter et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
General Statistical Modeling of Data from Protein Relative Expression Isobaric Tags
Florian P. Breitwieser et al.
JOURNAL OF PROTEOME RESEARCH (2011)
HSV-1 Cgal+ Infection Promotes Quaking RNA Binding Protein Production and Induces Nuclear-Cytoplasmic Shuttling of Quaking I-5 Isoform in Human Hepatoma Cells
Virginia Sanchez-Quiles et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
Protein localization as a principal feature of the etiology and comorbidity of genetic diseases
Solip Park et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Reactome: a database of reactions, pathways and biological processes
David Croft et al.
NUCLEIC ACIDS RESEARCH (2011)
UniProt Knowledgebase: a hub of integrated protein data
Michele Magrane
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Post-translational modifications in host cells during bacterial infection
David Ribet et al.
FEBS LETTERS (2010)
A Robust Error Model for iTRAQ Quantification Reveals Divergent Signaling between Oncogenic FLT3 Mutants in Acute Myeloid Leukemia
Yi Zhang et al.
MOLECULAR & CELLULAR PROTEOMICS (2010)
Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
Daniele Merico et al.
PLOS ONE (2010)
Organelle proteomics experimental designs and analysis
Laurent Gatto et al.
PROTEOMICS (2010)
Improved sub-cellular resolution via simultaneous analysis of organelle proteomics data across varied experimental conditions
Matthew W. B. Trotter et al.
PROTEOMICS (2010)
Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics
Deborah L. Diamond et al.
PLOS PATHOGENS (2010)
A scaling normalization method for differential expression analysis of RNA-seq data
Mark D. Robinson et al.
GENOME BIOLOGY (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
A statistical framework for protein quantitation in bottom-up MS-based proteomics
Yuliya Karpievitch et al.
BIOINFORMATICS (2009)
Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition
Yuliya V. Karpievitch et al.
BIOINFORMATICS (2009)
Prediction of disease-related mutations affecting protein localization
Kirsti Laurila et al.
BMC GENOMICS (2009)
BioMart - biological queries made easy
Damian Smedley et al.
BMC GENOMICS (2009)
Bioinformatics analysis of mass spectrometry-based proteomics data sets
Chanchal Kumar et al.
FEBS LETTERS (2009)
Mapping Organelle Proteins and Protein Complexes in Drosophila melanogaster
Denise J. L. Tan et al.
JOURNAL OF PROTEOME RESEARCH (2009)
The Organelle Proteome of the DT40 Lymphocyte Cell Line
Stephanie L. Hall et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Normalization and Statistical Analysis of Quantitative Proteomics Data Generated by Metabolic Labeling
Lily Ting et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
Da Wei Huang et al.
NUCLEIC ACIDS RESEARCH (2009)
Empirical Bayes Analysis of Quantitative Proteomics Experiments
Adam A. Margolin et al.
PLOS ONE (2009)
Bayesian Analysis of iTRAQ Data with Nonrandom Missingness: Identification of Differentially Expressed Proteins
Ruiyan Luo et al.
STATISTICS IN BIOSCIENCES (2009)
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
Mi-Youn Brusniak et al.
BMC BIOINFORMATICS (2008)
Techniques for clustering gene expression data
G. Kerr et al.
COMPUTERS IN BIOLOGY AND MEDICINE (2008)
Protein misfolding and disease: from the test tube to the organism
Leila M. Luheshi et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2008)
A computational strategy to analyze label-free temporal bottom-up proteomics data
Xiuxia Du et al.
JOURNAL OF PROTEOME RESEARCH (2008)
A statistical model for iTRAQ data analysis
Elizabeth G. Hill et al.
JOURNAL OF PROTEOME RESEARCH (2008)
clValid: An R package for cluster validation
Guy Brock et al.
JOURNAL OF STATISTICAL SOFTWARE (2008)
Significance Analysis of Spectral Count Data in Label-free Shotgun Proteomics
Hyungwon Choi et al.
MOLECULAR & CELLULAR PROTEOMICS (2008)
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
Juergen Cox et al.
NATURE BIOTECHNOLOGY (2008)
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
Brad T. Sherman et al.
BMC BIOINFORMATICS (2007)
Capturing heterogeneity in gene expression studies by surrogate variable analysis
Jeffrey T. Leek et al.
PLOS GENETICS (2007)
g:Profiler -: a web-based toolset for functional profiling of gene lists from large-scale experiments
Jueri Reimand et al.
NUCLEIC ACIDS RESEARCH (2007)
Invasion of host cells by malaria parasites:: a tale of two protein families
Jayasree Iyer et al.
MOLECULAR MICROBIOLOGY (2007)
pcaMethods - a bioconductor package providing PCA methods for incomplete data
Wolfram Stacklies et al.
BIOINFORMATICS (2007)
Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe
Michael W. Schmidt et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Assessment of hierarchical clustering methodologies for proteomic data mining
Bruno Meunier et al.
JOURNAL OF PROTEOME RESEARCH (2007)
Mfuzz: A software package for soft clustering of microarray data
Lokesh Kumar et al.
BIOINFORMATION (2007)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
Jesper V. Olsen et al.
CELL (2006)
Evaluation and comparison of gene clustering methods in microarray analysis
Anbupalam Thalamuthu et al.
BIOINFORMATICS (2006)
Mapping the Arabidopsis organelle proteome
TPJ Dunkley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
A mammalian organelle map by protein correlation profiling
LJ Foster et al.
CELL (2006)
Hybrid hierarchical clustering with applications to microarray data
H Chipman et al.
BIOSTATISTICS (2006)
Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics
SJ Callister et al.
JOURNAL OF PROTEOME RESEARCH (2006)
Clustering of gene expression data: performance and similarity analysis
Longde Yin et al.
BMC BIOINFORMATICS (2006)
How does gene expression clustering work?
P D'haeseleer
NATURE BIOTECHNOLOGY (2005)
Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules
Y Zhang et al.
MOLECULAR & CELLULAR PROTEOMICS (2005)
Computational cluster validation in post-genomic data analysis
J Handl et al.
BIOINFORMATICS (2005)
Downregulation of natural killer cell-activating ligand CD155 by human cytomegalovirus UL141
P Tomasec et al.
NATURE IMMUNOLOGY (2005)
Missing value estimation for DNA microarray gene expression data: local least squares imputation
H Kim et al.
BIOINFORMATICS (2005)
Nuclear transport and cancer: From mechanism to intervention
TR Kau et al.
NATURE REVIEWS CANCER (2004)
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
B Blagoev et al.
NATURE BIOTECHNOLOGY (2004)
GO::TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
EI Boyle et al.
BIOINFORMATICS (2004)
The Gene Ontology (GO) database and informatics resource
MA Harris et al.
NUCLEIC ACIDS RESEARCH (2004)
Discriminant models for high-throughput proteomics mass spectrometer data
PV Purohit et al.
PROTEOMICS (2003)
Clustering gene expression data using adaptive double self-organizing map
H Ressom et al.
PHYSIOLOGICAL GENOMICS (2003)
Fuzzy C-means method for clustering microarray data
D Dembélé et al.
BIOINFORMATICS (2003)
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
BM Bolstad et al.
BIOINFORMATICS (2003)
Microarray data normalization and transformation
J Quackenbush
NATURE GENETICS (2002)
Judging the quality of gene expression-based clustering methods using gene annotation
FD Gibbons et al.
GENOME RESEARCH (2002)
A comparison of self-organizing map algorithm and some conventional statistical methods for ecological community ordination
JL Giraudel et al.
ECOLOGICAL MODELLING (2001)
Significance analysis of microarrays applied to the ionizing radiation response
VG Tusher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Using Bayesian networks to analyze expression data
N Friedman et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2000)