4.8 Article

SCAPP: an algorithm for improved plasmid assembly in metagenomes

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

gplas: a comprehensive tool for plasmid analysis using short-read graphs

Sergio Arredondo-Alonso et al.

BIOINFORMATICS (2020)

Article Biochemical Research Methods

PlasClass improves plasmid sequence classification

David Pellow et al.

PLoS Computational Biology (2020)

Article Biochemistry & Molecular Biology

Plasmid detection and assembly in genomic and metagenomic data sets

Dmitry Antipov et al.

GENOME RESEARCH (2019)

Article Biochemistry & Molecular Biology

PLSDB: a resource of complete bacterial plasmids

Valentina Galata et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures

Pawel S. Krawczyk et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Genetics & Heredity

On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data

Sergio Arredondo-Alonso et al.

MICROBIAL GENOMICS (2017)

Article Microbiology

In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

Alessandra Carattoli et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)

Article Biochemical Research Methods

A method for purifying high quality and high yield plasmid DNA for metagenomic and deep sequencing approaches

Aya Brown Kav et al.

JOURNAL OF MICROBIOLOGICAL METHODS (2013)

Article Biochemistry & Molecular Biology

Ab initio gene identification in metagenomic sequences

Wenhan Zhu et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)