4.7 Article

A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer

Journal

GENOME RESEARCH
Volume 26, Issue 6, Pages 745-755

Publisher

COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT
DOI: 10.1101/gr.201814.115

Keywords

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Funding

  1. NIH, National Cancer Institute (NCI) [T32 CA154274]
  2. NIH, National Institute of Diabetes and Digestive and Kidney Diseases [T32 DK067872]
  3. NIH, NCI [R01 CA077337, R01 CA166661]
  4. NIH, National Human Genome Research Institute [R01 HG002898]

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Although human LINE-1 (L1) elements are actively mobilized in many cancers, a role for somatic L1 retrotransposition in tumor initiation has not been conclusively demonstrated. Here, we identify a novel somatic L1 insertion in the APC tumor suppressor gene that provided us with a unique opportunity to determine whether such insertions can actually initiate colorectal cancer (CRC), and if so, how this might occur. Our data support a model whereby a hot L1 source element on Chromosome 17 of the patient's genome evaded somatic repression in normal colon tissues and thereby initiated CRC by mutating the APC gene. This insertion worked together with a point mutation in the second APC allele to initiate tumorigenesis through the classic two-hit CRC pathway. We also show that L1 source profiles vary considerably depending on the ancestry of an individual, and that population-specific hot L1 elements represent a novel form of cancer risk.

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