Related references
Note: Only part of the references are listed.CRISPRidentify: identification of CRISPR arrays using machine learning approach
Alexander Mitrofanov et al.
NUCLEIC ACIDS RESEARCH (2021)
Pruning and Tending Immune Memories: Spacer Dynamics in the CRISPR Array
Sandra C. Garrett
FRONTIERS IN MICROBIOLOGY (2021)
Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants
Kira S. Makarova et al.
NATURE REVIEWS MICROBIOLOGY (2020)
Identification of the putativeN-acetylglucosaminidase CseA associated with daughter cell separation inTetragenococcus halophilus
Daichi Shirakawa et al.
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2020)
Transposition of IS4 Family Insertion Sequences ISTeha3, ISTeha4, and ISTeha5 into the arc Operon Disrupts Arginine Deiminase System in Tetragenococcus halophilus
Takura Wakinaka et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2019)
Isolation of halophilic lactic acid bacteria possessing aspartate decarboxylase and application to fish sauce fermentation starter
Takura Wakinaka et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2019)
Tetragenococcus halophilus MJ4 as a starter culture for repressing biogenic amine (cadaverine) formation during saeu-jeot (salted shrimp) fermentation
Kyung Hyun Kim et al.
FOOD MICROBIOLOGY (2019)
Genomic and metabolic features of Tetragenococcus halophilus as revealed by pan-genome and transcriptome analyses
Byung Hee Chun et al.
FOOD MICROBIOLOGY (2019)
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
David Couvin et al.
NUCLEIC ACIDS RESEARCH (2018)
MUMmer4: A fast and versatile genome alignment system
Guillaume Marcais et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Genomic insights into the non-histamine production and proteolytic and lipolytic activities of Tetragenococcus halophilus KUD23
Jong-Hoon Lee et al.
FEMS MICROBIOLOGY LETTERS (2018)
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
Yasuhiro Tanizawa et al.
BIOINFORMATICS (2018)
Improvement of fish sauce quality by combined inoculation of Tetragenococcus halophilus MS33 and Virgibacillus sp SK37
Natteewan Udomsil et al.
FOOD CONTROL (2017)
Comparative genomics of &ITTetragenococcus halophilus&IT
Ikuko Nishimura et al.
JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY (2017)
Recruitment of CRISPR-Cas systems by Tn7-like transposons
Joseph E. Peters et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Draft Genome Sequence of Tetragenococcus halophilus Strain FBL3, a Probiotic Bacterium Isolated from Galchijeot, a Salted Fermented Food, in the Republic of Korea
Eiseul Kim et al.
GENOME ANNOUNCEMENTS (2017)
Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens
Leighton Pritchard et al.
ANALYTICAL METHODS (2016)
DFAST and DAGA: web-based integrated genome annotation tools and resources
Yasuhiro Tanizawa et al.
BIOSCIENCE OF MICROBIOTA FOOD AND HEALTH (2016)
Strain diversity and phage resistance in complex dairy starter cultures
M. Spus et al.
JOURNAL OF DAIRY SCIENCE (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
RefSeq microbial genomes database: new representation and annotation strategy
Tatiana Tatusova et al.
NUCLEIC ACIDS RESEARCH (2014)
Suppressive effect of Tetragenococcus halophilus, isolated from fish-nukazuke, on histamine accumulation in salted and fermented fish
Takashi Kuda et al.
FOOD CHEMISTRY (2012)
Monitoring of the microbial communities involved in the soy sauce manufacturing process by PCR-denaturing gradient gel electrophoresis
Yasushi Tanaka et al.
FOOD MICROBIOLOGY (2012)
Characterization of Tetragenococcus strains from sugar thick juice reveals a novel species, Tetragenococcus osmophilus sp nov., and divides Tetragenococcus halophilus into two subspecies, T. halophilus subsp halophilus subsp nov and T. halophilus subsp flandriensis subsp nov.
A. Juste et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
CRISPR/Cas System and Its Role in Phage-Bacteria Interactions
Helene Deveau et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 64, 2010 (2010)
MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities
Yongchao Liu et al.
BIOINFORMATICS (2010)
genoPlotR: comparative gene and genome visualization in R
Lionel Guy et al.
BIOINFORMATICS (2010)
Proteinase-producing halophilic lactic acid bacteria isolated from fish sauce fermentation and their ability to produce volatile compounds
Natteewan Udomsil et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2010)
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
Josiane E. Garneau et al.
NATURE (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
Shifting the genomic gold standard for the prokaryotic species definition
Michael Richter et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Analysis of a 30 kbp plasmid encoding histidine decarboxylase gene in Tetragenococcus halophilus isolated from fish sauce
Masataka Satomi et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2008)
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
Charles Bland et al.
BMC BIOINFORMATICS (2007)
CRISPR provides acquired resistance against viruses in prokaryotes
Rodolphe Barrangou et al.
SCIENCE (2007)
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
Johan Goris et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
Gerard Talavera et al.
SYSTEMATIC BIOLOGY (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Isolation and characterization of lactic acid bacteria from suan-tsai (fermented mustard), a traditional fermented food in Taiwan
Y. -S. Chen et al.
JOURNAL OF APPLIED MICROBIOLOGY (2006)
Circular genome visualization and exploration using CGView
P Stothard et al.
BIOINFORMATICS (2005)
Lactic acid bacteria as functional starter cultures for the food fermentation industry
F Leroy et al.
TRENDS IN FOOD SCIENCE & TECHNOLOGY (2004)
Mauve: Multiple alignment of conserved genomic sequence with rearrangements
ACE Darling et al.
GENOME RESEARCH (2004)