Related references
Note: Only part of the references are listed.Global Pharmacopoeia Genome Database is an integrated and mineable genomic database for traditional medicines derived from eight international pharmacopoeias
Baosheng Liao et al.
SCIENCE CHINA-LIFE SCIENCES (2022)
Herbgenomics: A stepping stone for research into herbal medicine
Haoyu Hu et al.
SCIENCE CHINA-LIFE SCIENCES (2019)
The bread wheat epigenomic map reveals distinct chromatin architectural and evolutionary features of functional genetic elements
Zijuan Li et al.
GENOME BIOLOGY (2019)
3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments
Pengfei Dong et al.
MOLECULAR PLANT (2017)
Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition
Ilya M. Flyamer et al.
NATURE (2017)
Neuroblastoma is composed of two super-enhancer-associated differentiation states
Tim van Groningen et al.
NATURE GENETICS (2017)
Developmentally regulated higher-order chromatin interactions orchestrate B cell fate commitment
Ravi Boya et al.
NUCLEIC ACIDS RESEARCH (2017)
Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
Biola M. Javierre et al.
CELL (2016)
The 3D Genome as Moderator of Chromosomal Communication
Job Dekker et al.
CELL (2016)
Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming
Peter Hugo Lodewijk Krijger et al.
CELL STEM CELL (2016)
Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution
Chang Liu et al.
GENOME RESEARCH (2016)
Topologically associated domains enriched for lineage-specific genes reveal expression-dependent nuclear topologies during myogenesis
Daniel S. Neems et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome
Anthony D. Schmitt et al.
CELL REPORTS (2016)
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Neva C. Durand et al.
CELL SYSTEMS (2016)
ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
Guangchuang Yu et al.
BIOINFORMATICS (2015)
CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
Zhonghui Tang et al.
CELL (2015)
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changesin cellular differentiation
James Fraser et al.
MOLECULAR SYSTEMS BIOLOGY (2015)
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea et al.
NATURE BIOTECHNOLOGY (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
Matteo Vietri Rudan et al.
CELL REPORTS (2015)
Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells
A. Rasim Barutcu et al.
GENOME BIOLOGY (2015)
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
Hongshan Jiang et al.
BMC BIOINFORMATICS (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
A mechanistic link between gene regulation and genome architecture in mammalian development
Giancarlo Bonora et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2014)
Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
Francois Le Dily et al.
GENES & DEVELOPMENT (2014)
Hi-C Analysis in Arabidopsis Identifies the KNOT, a Structure with Similarities to the flamenco Locus of Drosophila
Stefan Grob et al.
MOLECULAR CELL (2014)
Genome-wide Hi-C Analyses in Wild-Type and Mutants Reveal High-Resolution Chromatin Interactions in Arabidopsis
Suhua Feng et al.
MOLECULAR CELL (2014)
Topologically associating domains are stable units of replication-timing regulation
Benjamin D. Pope et al.
NATURE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Chromosomal domains: epigenetic contexts and functional implications of genomic compartmentalization
Amos Tanay et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2013)
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
Vlad C. Seitan et al.
GENOME RESEARCH (2013)
Genome-Wide Analysis of Histone Modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica
Zhou Du et al.
MOLECULAR PLANT (2013)
A high-resolution map of the three-dimensional chromatin interactome in human cells
Fulai Jin et al.
NATURE (2013)
The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)
Darin R. Rokyta et al.
BMC GENOMICS (2012)
Spatial Organization of the Mouse Genome and Its Role in Recurrent Chromosomal Translocations
Yu Zhang et al.
CELL (2012)
Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
Tom Sexton et al.
CELL (2012)
The tomato genome sequence provides insights into fleshy fruit evolution
Shusei Sato et al.
NATURE (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
Spatial partitioning of the regulatory landscape of the X-inactivation centre
Elphege P. Nora et al.
NATURE (2012)
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
Maxim Imakaev et al.
NATURE METHODS (2012)
Chromosome Organization and Dynamics during Interphase, Mitosis, and Meiosis in Plants
Choon-Lin Tiang et al.
PLANT PHYSIOLOGY (2012)
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
Kevin C. Wang et al.
NATURE (2011)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids
Guangming He et al.
PLANT CELL (2010)
Comparative venom gland transcriptome surveys of the saw-scaled vipers (Viperidae: Echis) reveal substantial intra-family gene diversity and novel venom transcripts
Nicholas R. Casewell et al.
BMC GENOMICS (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana
Xiaoyu Zhang et al.
GENOME BIOLOGY (2009)
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
Lars Guelen et al.
NATURE (2008)
Moving chromatin within the interphase nucleus-controlled transitions?
Chien-Hui Chuang et al.
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2007)
Inventing an arsenal:: adaptive evolution and neofunctionalization of snake venom phospholipase A2 genes
Vincent J. Lynch
BMC EVOLUTIONARY BIOLOGY (2007)
Chromosome territories, nuclear architecture and gene regulation in mammalian cells
T Cremer et al.
NATURE REVIEWS GENETICS (2001)
Share Paper
