Related references
Note: Only part of the references are listed.New insights into the genomic evolution of cyanobacteria using herbarium exsiccatae
Petr Dvorak et al.
EUROPEAN JOURNAL OF PHYCOLOGY (2020)
The Importance of Mycological and Plant Herbaria in Tracking Plant Killers
Jean B. Ristaino
FRONTIERS IN ECOLOGY AND EVOLUTION (2020)
Mining ancient microbiomes using selective enrichment of damaged DNA molecules
Clemens L. Weiss et al.
BMC GENOMICS (2020)
Development and comparative validation of genomic-driven PCR-based assays to detectXanthomonas citripv. citri in citrus plants
Isabelle Robene et al.
BMC MICROBIOLOGY (2020)
Deciphering how plant pathogenic bacteria disperse and meet: Molecular epidemiology of Xanthomonas citri pv. citri at microgeographic scales in a tropical area of Asiatic citrus canker endemicity
Olivier Pruvost et al.
EVOLUTIONARY APPLICATIONS (2019)
The global burden of pathogens and pests on major food crops
Serge Savary et al.
NATURE ECOLOGY & EVOLUTION (2019)
DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage
Kristian Hanghoj et al.
GIGASCIENCE (2019)
A Decade Decoded: Spies and Hackers in the History of TAL Effectors Research
Alvaro L. Perez-Quintero et al.
ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 57, 2019 (2019)
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Andrew Rambaut et al.
SYSTEMATIC BIOLOGY (2018)
Implications and future prospects for evolutionary analyses of DNA in historical herbarium collections
Vanessa C. Bieker et al.
BOTANY LETTERS (2018)
TIPDATINGBEAST: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST
Adrien Rieux et al.
MOLECULAR ECOLOGY RESOURCES (2017)
Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements
D. Richard et al.
MOLECULAR ECOLOGY (2017)
Mining Metagenomic Data Sets for Ancient DNA: Recommended Protocols for Authentication
Felix M. Key et al.
TRENDS IN GENETICS (2017)
Defining the Core Citrus Leaf- and Root-Associated Microbiota: Factors Associated with Community Structure and Implications for Managing Huanglongbing (Citrus Greening) Disease
Ryan A. Blaustein et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)
Extraction of ultrashort DNA molecules from herbarium specimens
Rafal M. Gutaker et al.
BIOTECHNIQUES (2017)
Non-tenera Contamination and the Economic Impact of SHELL Genetic Testing in the Malaysian Independent Oil Palm Industry
Leslie C. -L. Ooi et al.
FRONTIERS IN PLANT SCIENCE (2016)
17th Century Variola Virus Reveals the Recent History of Smallpox
Ana T. Duggan et al.
CURRENT BIOLOGY (2016)
Inferences from tip-calibrated phylogenies: a review and a practical guide
Adrien Rieux et al.
MOLECULAR ECOLOGY (2016)
Methylome Analysis of Two Xanthomonas spp. Using Single-Molecule Real-Time Sequencing
Hoon Je Seong et al.
PLANT PATHOLOGY JOURNAL (2016)
Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples
Angela Glassing et al.
GUT PATHOGENS (2016)
Historic Late Blight Outbreaks Caused by a Widespread Dominant Lineage of Phytophthora infestans (Mont.) de Bary
Amanda C. Saville et al.
PLOS ONE (2016)
Behind the lines-actions of bacterial type III effector proteins in plant cells
Daniela Buettner
FEMS MICROBIOLOGY REVIEWS (2016)
Genome-Enabled Analysis of Plant-Pathogen Migration
Erica M. Goss
ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 53 (2015)
Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges
Jonathan L. Gordon et al.
BMC GENOMICS (2015)
The application of genomics to tracing bacterial pathogen transmission
Nicholas J. Croucher et al.
CURRENT OPINION IN MICROBIOLOGY (2015)
An efficient and scalable analysis framework for variant extraction and refinement from population-scale DNA sequence data
Goo Jun et al.
GENOME RESEARCH (2015)
The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data
Sebastian Duchene et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
First Report of Grapevine red blotch-associated virus in Archival Grapevine Material From Sonoma County, California
M. Al Rwahnih et al.
PLANT DISEASE (2015)
Measurably evolving pathogens in the genomic era
Roman Biek et al.
TRENDS IN ECOLOGY & EVOLUTION (2015)
Optimized tuning of TALEN specificity using non-conventional RVDs
Alexandre Juillerat et al.
SCIENTIFIC REPORTS (2015)
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
Xavier Didelot et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
NADPH-generating systems in bacteria and archaea
Sebastiaan K. Spaans et al.
FRONTIERS IN MICROBIOLOGY (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis
Kirsten I. Bos et al.
NATURE (2014)
A MLVA Genotyping Scheme for Global Surveillance of the Citrus Pathogen Xanthomonas citri pv. citri Suggests a Worldwide Geographical Expansion of a Single Genetic Lineage
Olivier Pruvost et al.
PLOS ONE (2014)
Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease
Yang Hu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus
Oliver Smith et al.
SCIENTIFIC REPORTS (2014)
Mining Herbaria for Plant Pathogen Genomes: Back to the Future
Kentaro Yoshida et al.
PLOS PATHOGENS (2014)
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
Hakon Jonsson et al.
BIOINFORMATICS (2013)
Variations in type III effector repertoires, pathological phenotypes and host range of Xanthomonas citri pv. citri pathotypes
Aline Escalon et al.
MOLECULAR PLANT PATHOLOGY (2013)
Sequence assembly demystified
Niranjan Nagarajan et al.
NATURE REVIEWS GENETICS (2013)
Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
Michael D. Martin et al.
NATURE COMMUNICATIONS (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
mapDamage: testing for damage patterns in ancient DNA sequences
Aurelien Ginolhac et al.
BIOINFORMATICS (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Limitations of next-generation genome sequence assembly
Can Alkan et al.
NATURE METHODS (2011)
Microbial Genomics and Infectious Diseases
David A. Relman
NEW ENGLAND JOURNAL OF MEDICINE (2011)
adephylo: new tools for investigating the phylogenetic signal in biological traits
Thibaut Jombart et al.
BIOINFORMATICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
High-throughput sequencing and clinical microbiology: progress, opportunities and challenges
Mark J. Pallen et al.
CURRENT OPINION IN MICROBIOLOGY (2010)
Reconstructing routes of invasion using genetic data: why, how and so what?
Arnaud Estoup et al.
MOLECULAR ECOLOGY (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
The Origins of Plant Pathogens in Agro-Ecosystems
Eva H. Stukenbrock et al.
Annual Review of Phytopathology (2008)
Diversity of PthA gene of Xanthomonas strains causing citrus bacterial canker and its relationship with virulence
Seungdon Lee et al.
PLANT PATHOLOGY JOURNAL (2008)
Genetic diversity of citrus bacterial canker pathogens preserved in herbarium specimens
Wenbin Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Barley yellow dwarf viruses (BYDVs) preserved in herbarium specimens illuminate historical disease ecology of invasive and native grasses
Carolyn M. Malmstrom et al.
JOURNAL OF ECOLOGY (2007)
Comparisons of dN/dS are time dependent for closely related bacterial genomes
EPC Rocha et al.
JOURNAL OF THEORETICAL BIOLOGY (2006)
After the famine: Plant pathology, Phytophthora infestans, and the late blight of potatoes, 1845-1960
RS Turner
HISTORICAL STUDIES IN THE PHYSICAL AND BIOLOGICAL SCIENCES (2005)
Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers
PK Anderson et al.
TRENDS IN ECOLOGY & EVOLUTION (2004)
Genetic analyses from ancient DNA
S Paabo et al.
ANNUAL REVIEW OF GENETICS (2004)
Xanthomonas axonopodis pv. citri: factors affecting successful eradication of citrus canker
JH Graham et al.
MOLECULAR PLANT PATHOLOGY (2004)
Herbarium studies on the distribution of anther-smut fungus (Microbotryum violaceum) and Silene species (Caryophyllaceae) in the eastern United States
J Antonovics et al.
AMERICAN JOURNAL OF BOTANY (2003)
Measurably evolving populations
AJ Drummond et al.
TRENDS IN ECOLOGY & EVOLUTION (2003)
Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
ACR da Silva et al.
NATURE (2002)
PCR amplification of the Irish potato famine pathogen from historic specimens
JB Ristaino et al.
NATURE (2001)
Share Paper
