Related references
Note: Only part of the references are listed.The negative elongation factor NELF promotes induced transcriptional response of Drosophila ecdysone-dependent genes
Marina Yu Mazina et al.
SCIENTIFIC REPORTS (2021)
Boundaries potentiate polycomb response element-mediated silencing
Maksim Erokhin et al.
BMC BIOLOGY (2021)
Mutations in the insulator protein Suppressor of Hairy wing induce genome instability
Shih-Jui Hsu et al.
CHROMOSOMA (2020)
Super-resolution microscopy reveals how histone tail acetylation affects DNA compaction within nucleosomes in vivo
Jason Otterstrom et al.
NUCLEIC ACIDS RESEARCH (2019)
DNA sequence models of genome-wide Drosophila melanogaster Polycomb binding sites improve generalization to independent Polycomb Response Elements
Bjorn Andre Bredesen et al.
NUCLEIC ACIDS RESEARCH (2019)
The Drosophila nuclear receptors EcR and ERR jointly regulate the expression of genes involved in carbohydrate metabolism
Elena Kovalenko et al.
INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY (2019)
The same domain of Su(Hw) is required for enhancer blocking and direct promoter repression
Larisa Melnikova et al.
SCIENTIFIC REPORTS (2019)
One signal stimulates different transcriptional activation mechanisms
Marina Yu. Mazina et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2018)
Insulator Protein Su(Hw) Is Indispensable for Amplification of Part of Drosophila Amplicons in Follicular Cells (DAFCs) during Early Oogenesis
A. N. Krasnov et al.
DOKLADY BIOCHEMISTRY AND BIOPHYSICS (2018)
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
Enis Afgan et al.
NUCLEIC ACIDS RESEARCH (2018)
Role of Su(Hw) zinc finger 10 and interaction with CP190 and Mod(mdg4) proteins in recruiting the Su(Hw) complex to chromatin sites in Drosophila
Larisa Melnikova et al.
PLOS ONE (2018)
Differential Occupancy of Two GA-Binding Proteins Promotes Targeting of the Drosophila Dosage Compensation Complex to the Male X Chromosome
Emily G. Kaye et al.
CELL REPORTS (2018)
From structure to mechanism-understanding initiation of DNA replication
Alberto Riera et al.
GENES & DEVELOPMENT (2017)
Deciphering the DNA code for the function of the Drosophila polydactyl zinc finger protein Suppressor of Hairy-wing
Ryan M. Baxley et al.
NUCLEIC ACIDS RESEARCH (2017)
Mechanisms for initiating cellular DNA replication
Franziska Bleichert et al.
SCIENCE (2017)
Profiling Cellular Substrates of Lysine Acetyltransferases GCN5 and p300 with Orthogonal Labeling and Click Chemistry
Zhen Han et al.
ACS CHEMICAL BIOLOGY (2017)
Distinct Roles of Chromatin Insulator Proteins in Control of the Drosophila Bithorax Complex
Mikhail Savitsky et al.
GENETICS (2016)
deepTools2: a next generation web server for deep-sequencing data analysis
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2016)
Combgap contributes to recruitment of Polycomb group proteins in Drosophila
Payal Ray et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
The Histone Variant H3.3 Is Enriched at Drosophila Amplicon Origins but Does Not Mark Them for Activation
Neha P. Paranjape et al.
G3-GENES GENOMES GENETICS (2016)
Automatic stage identification of Drosophila egg chamber based on DAPI images
Dongyu Jia et al.
SCIENTIFIC REPORTS (2016)
DNA sequence templates adjacent nucleosome and ORC sites at gene amplification origins in Drosophila
Jun Liu et al.
NUCLEIC ACIDS RESEARCH (2015)
Histone H4 acetylation required for chromatin decompaction during DNA replication
Kun Ruan et al.
SCIENTIFIC REPORTS (2015)
Chromatin Immunoprecipitation Indirect Peaks Highlight Long-Range Interactions of Insulator Proteins and Pol II Pausing
Jun Liang et al.
MOLECULAR CELL (2014)
High-resolution mapping of transcription factor binding sites on native chromatin
Sivakanthan Kasinathan et al.
NATURE METHODS (2014)
The Role of Transcription in the Activation of a Drosophila Amplification Origin
Brian L. Hua et al.
G3-GENES GENOMES GENETICS (2014)
Insulator protein Su(Hw) recruits SAGA and Brahma complexes and constitutes part of Origin Recognition Complex-binding sites in the Drosophila genome
Nadezhda E. Vorobyeva et al.
NUCLEIC ACIDS RESEARCH (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
The role of PR-Set7 in replication licensing depends on Suv4-20h
David B. Beck et al.
GENES & DEVELOPMENT (2012)
Nature and function of insulator protein binding sites in the Drosophila genome
Yuri B. Schwartz et al.
GENOME RESEARCH (2012)
Analysis of model replication origins in Drosophila reveals new aspects of the chromatin landscape and its relationship to origin activity and the prereplicative complex
Jun Liu et al.
MOLECULAR BIOLOGY OF THE CELL (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA
Jeremy M. Simon et al.
NATURE PROTOCOLS (2012)
Identifying ChIP-seq enrichment using MACS
Jianxing Feng et al.
NATURE PROTOCOLS (2012)
Genome-wide studies of the multi-zinc finger Drosophila Suppressor of Hairy-wing protein in the ovary
Alexey A. Soshnev et al.
NUCLEIC ACIDS RESEARCH (2012)
The role of the Suppressor of Hairy-wing insulator protein in Drosophila oogenesis
Ryan M. Baxley et al.
DEVELOPMENTAL BIOLOGY (2011)
Integrative analysis of gene amplification in Drosophila follicle cells: parameters of origin activation and repression
Jane C. Kim et al.
GENES & DEVELOPMENT (2011)
Analysis of a Drosophila amplicon in follicle cells highlights the diversity of metazoan replication origins
Jane C. Kim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading
Heather K. MacAlpine et al.
GENOME RESEARCH (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Dynamic changes in histone acetylation regulate origins of DNA replication
Ashwin Unnikrishnan et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
GCN5 Is a Positive Regulator of Origins of DNA Replication in Saccharomyces cerevisiae
Maria Claudia Espinosa et al.
PLOS ONE (2010)
Genome-Wide Kinetics of Nucleosome Turnover Determined by Metabolic Labeling of Histones
Roger B. Deal et al.
SCIENCE (2010)
Acetylation by GCN5 regulates CDC6 phosphorylation in the S phase of the cell cycle
Roberta Paolinelli et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Investigation of the properties of non-gypsy Suppressor of Hairy-wing-binding sites
Emily J. Kuhn-Parnell et al.
GENETICS (2008)
Drosophila follicle cell amplicons as models for metazoan DNA replication:: A cyclinE mutant exhibits increased replication fork elongation
Eugenia A. Park et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Evolutionarily conserved E(y)2/Sus1 protein is essential for the barrier activity of Su(Hw)-dependent insulators in Drosophila
Maria Kurshakova et al.
MOLECULAR CELL (2007)
Developmentally regulated histone modifications in Drosophila follicle cells:: initiation of gene amplification is associated with histone H3 and H4 hyperacetylation and H1 phosphorylation
Tom Hartl et al.
CHROMOSOMA (2007)
Histone acetylation increases chromatin accessibility
SM Görisch et al.
JOURNAL OF CELL SCIENCE (2005)
CDKs promote DNA replication origin licensing in human cells by protecting Cdc6 from APC/C-dependent proteolysis
N Mailand et al.
CELL (2005)
Developmental gene amplification: insights into DNA replication and gene expression
JM Claycomb et al.
TRENDS IN GENETICS (2005)
The centrolsomal protein CP190 is a component of the gypsy chromatin insulator
CY Pai et al.
MOLECULAR CELL (2004)
Chromatin regulates origin activity in Drosophila follicle cells
BD Aggarwal et al.
NATURE (2004)
Gene amplification as a developmental strategy: Isolation of two developmental amplicons in Drosophila
JM Claycomb et al.
DEVELOPMENTAL CELL (2004)
Histone acetylation regulates the time of replication origin firing
M Vogelauer et al.
MOLECULAR CELL (2002)
DNA double-strand break-induced phosphorylation of Drosophila histone variant H2Av helps prevent radiation-induced apoptosis
JP Madigan et al.
NUCLEIC ACIDS RESEARCH (2002)
Share Paper
