Related references
Note: Only part of the references are listed.Evolutionary stalling and a limit on the power of natural selection to improve a cellular module
Sandeep Venkataram et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Metabolic excretion associated with nutrient-growth dysregulation promotes the rapid evolution of an overt metabolic defect
Robin Green et al.
PLOS BIOLOGY (2020)
Social genes are selection hotspots in kin groups of a soil microbe
Sebastien Wielgoss et al.
SCIENCE (2019)
Modular epistasis and the compensatory evolution of gene deletion mutants
Jose I. Rojas Echenique et al.
PLOS GENETICS (2019)
Nutrient and Stress Sensing in Pathogenic Yeasts
Julian C. Rutherford et al.
FRONTIERS IN MICROBIOLOGY (2019)
Hyperactive TORC1 sensitizes yeast cells to endoplasmic reticulum stress by compromising cell wall integrity
Khadija Ahmed et al.
FEBS LETTERS (2019)
Functional genomics of dietary restriction and longevity in yeast
Sergio E. Campos et al.
MECHANISMS OF AGEING AND DEVELOPMENT (2019)
Antibiotic Resistance Evolution Is Contingent on the Quorum-Sensing Response in Pseudomonas aeruginosa
Sara Hernando-Amado et al.
MOLECULAR BIOLOGY AND EVOLUTION (2019)
Detecting genetic interactions using parallel evolution in experimental populations
Kaitlin J. Fisher et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)
Convergent evolution in the genomics era: new insights and directions
Timothy B. Sackton et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)
Convergent evolution of linked mating-type loci in basidiomycete fungi
Sheng Sun et al.
PLOS GENETICS (2019)
Evolutionary and functional patterns of shared gene neighbourhood in fungi
Marina Marcet-Houben et al.
NATURE MICROBIOLOGY (2019)
High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast
Alex N. Nguyen Ba et al.
NATURE (2019)
Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration
Amitesh Anand et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Integrated TORC1 and PKA signaling control the temporal activation of glucose-induced gene expression in yeast
Joseph Kunkel et al.
NATURE COMMUNICATIONS (2019)
Single nucleotide mapping of trait space reveals Pareto fronts that constrain adaptation
Yuping Li et al.
NATURE ECOLOGY & EVOLUTION (2019)
DNA fragility in the parallel evolution of pelvic reduction in stickleback fish
Kathleen T. Xie et al.
SCIENCE (2019)
The dynamics of adaptive genetic diversity during the early stages of clonal evolution
Jamie R. Blundell et al.
NATURE ECOLOGY & EVOLUTION (2019)
Hidden Complexity of Yeast Adaptation under Simple Evolutionary Conditions
Yuping Li et al.
CURRENT BIOLOGY (2018)
Spontaneous Changes in Ploidy Are Common in Yeast
Yaniv Harari et al.
CURRENT BIOLOGY (2018)
Glutaredoxin Deletion Shortens Chronological Life Span in Saccharomyces cerevisiae via ROS-Mediated Ras/PKA Activation
Yan Liu et al.
JOURNAL OF PROTEOME RESEARCH (2018)
Adaptive genome duplication affects patterns of molecular evolution in Saccharomyces cerevisiae
Kaitlin J. Fisher et al.
PLOS GENETICS (2018)
Experimental evolution of diverse Escherichia coli metabolic mutants identifies genetic loci for convergent adaptation of growth rate
Thomas P. Wytock et al.
PLoS Genetics (2018)
Contingency and determinism in evolution: Replaying life's tape
Zachary D. Blount et al.
SCIENCE (2018)
Bartender: a fast and accurate clustering algorithm to count barcode reads
Lu Zhao et al.
BIOINFORMATICS (2018)
iSeq: A New Double-Barcode Method for Detecting Dynamic Genetic Interactions in Yeast
Mia Jaffe et al.
G3-GENES GENOMES GENETICS (2017)
Genomics of Adaptation Depends on the Rate of Environmental Change in Experimental Yeast Populations
Florien A. Gorter et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
The dynamics of molecular evolution over 60,000 generations
Benjamin H. Good et al.
NATURE (2017)
Specificity of genome evolution in experimental populations of Escherichia coli evolved at different temperatures
Daniel E. Deatherage et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Seeking Goldilocks During Evolution of Drug Resistance
Gavin Sherlock et al.
PLOS BIOLOGY (2017)
Widespread Genetic Incompatibilities between First-Step Mutations during Parallel Adaptation of Saccharomyces cerevisiae to a Common Environment
Jasmine Ono et al.
PLOS BIOLOGY (2017)
Diminishing-returns epistasis decreases adaptability along an evolutionary trajectory
Andrea Wunsche et al.
NATURE ECOLOGY & EVOLUTION (2017)
Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria
Jessica Plucain et al.
BMC EVOLUTIONARY BIOLOGY (2016)
Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast
Sandeep Venkataram et al.
CELL (2016)
Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations
Marcus M. Dillon et al.
EVOLUTION (2016)
Epistatic interactions between ancestral genotype and beneficial mutations shape evolvability in Pseudomonas aeruginosa
Danna R. Gifford et al.
EVOLUTION (2016)
Tempo and mode of genome evolution in a 50,000-generation experiment
Olivier Tenaillon et al.
NATURE (2016)
Spatiotemporal microbial evolution on antibiotic landscapes
Michael Baym et al.
SCIENCE (2016)
Rapid construction of a whole-genome transposon insertion collection for Shewanella oneidensis by Knockout Sudoku
Michael Baym et al.
NATURE COMMUNICATIONS (2016)
Repeated evolution and the impact of evolutionary history on adaptation
Terry J. Ord et al.
BMC EVOLUTIONARY BIOLOGY (2015)
The Effect of Selection Environment on the Probability of Parallel Evolution
Susan F. Bailey et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Quantitative evolutionary dynamics using high-resolution lineage tracking
Sasha F. Levy et al.
NATURE (2015)
Elucidating the molecular architecture of adaptation via evolve and resequence experiments
Anthony Long et al.
NATURE REVIEWS GENETICS (2015)
A tortoise-hare pattern seen in adapting structured and unstructured populations suggests a rugged fitness landscape in bacteria
Joshua R. Nahum et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Adaptation to High Ethanol Reveals Complex Evolutionary Pathways
Karin Voordeckers et al.
PLOS GENETICS (2015)
Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes
Michael Baym et al.
PLOS ONE (2015)
Glucose- and nitrogen sensing and regulatory mechanisms in Saccharomyces cerevisiae
Steven V. Rodkaer et al.
FEMS YEAST RESEARCH (2014)
The Valley-of-Death: Reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment
Kami E. Chiotti et al.
GENOMICS (2014)
Global epistasis makes adaptation predictable despite sequence-level stochasticity
Sergey Kryazhimskiy et al.
SCIENCE (2014)
Molecular Specificity, Convergence and Constraint Shape Adaptive Evolution in Nutrient-Poor Environments
Jungeui Hong et al.
PLOS GENETICS (2014)
Nutrient sensing and signaling in the yeast Saccharomyces cerevisiae
Michaela Conrad et al.
FEMS MICROBIOLOGY REVIEWS (2014)
Evolutionary history and genetic parallelism affect correlated responses to evolution
Mickael Le Gac et al.
MOLECULAR ECOLOGY (2013)
Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
Gregory I. Lang et al.
NATURE (2013)
The genetic causes of convergent evolution
David L. Stern
NATURE REVIEWS GENETICS (2013)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Life History Shapes Trait Heredity by Accumulation of Loss-of-Function Alleles in Yeast
Eniko Zorgo et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
The probability of genetic parallelism and convergence in natural populations
Gina L. Conte et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
The Molecular Diversity of Adaptive Convergence
Olivier Tenaillon et al.
SCIENCE (2012)
Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population
Aisha I. Khan et al.
SCIENCE (2011)
Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation
Hsin-Hung Chou et al.
SCIENCE (2011)
Reciprocal Sign Epistasis between Frequently Experimentally Evolved Adaptive Mutations Causes a Rugged Fitness Landscape
Daniel J. Kvitek et al.
PLOS GENETICS (2011)
Diminishing Returns From Beneficial Mutations and Pervasive Epistasis Shape the Fitness Landscape for Rifampicin Resistance in Pseudomonas aeruginosa
R. C. MacLean et al.
GENETICS (2010)
Escherichia coli rpoB Mutants Have Increased Evolvability in Proportion to Their Fitness Defects
Jeffrey E. Barrick et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Transcriptional Regulation in Yeast during Diauxic Shift and Stationary Phase
Luciano Galdieri et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae
Katy C. Kao et al.
NATURE GENETICS (2008)
Glucose-stimulated cAMP-protein kinase A pathway in yeast Saccharomyces cerevisiae
Hisanori Tamaki
JOURNAL OF BIOSCIENCE AND BIOENGINEERING (2007)
Genomic convergence toward diploidy in Saccharomyces cerevisiae
Aleeza C. Gerstein et al.
PLOS GENETICS (2006)
Tempo and constraint of adaptive evolution in Escherichia coli (Enterobacteriaceae, Enterobacteriales)
Francisco B. -G. Moore et al.
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2006)
Glucose signaling in Saccharomyces cerevisiae
GM Santangelo
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2006)
Pervasive compensatory adaptation in Escherichia coli
FBG Moore et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2000)
Share Paper
