Related references
Note: Only part of the references are listed.A Multidrug-Resistant Salmonella Infantis Clone Is Spreading and Recombining in the United States
Gregory H. Tyson et al.
MICROBIAL DRUG RESISTANCE (2021)
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
Zhemin Zhou et al.
GENOME RESEARCH (2020)
Assessing the role of live poultry trade in community-structured transmission of avian influenza in China
Qiqi Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
An international outbreak of Salmonella enterica serotype Enteritidis linked to eggs from Poland: a microbiological and epidemiological study
Roan Pijnacker et al.
LANCET INFECTIOUS DISEASES (2019)
International trade of animal feed: its relationships with livestock density and N and P balances at country level
Jingmeng Wang et al.
NUTRIENT CYCLING IN AGROECOSYSTEMS (2018)
SnapperDB: a database solution for routine sequencing analysis of bacterial isolates
Timothy Dallman et al.
BIOINFORMATICS (2018)
MUMmer4: A fast and versatile genome alignment system
Guillaume Marcais et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Zhemin Zhou et al.
GENOME RESEARCH (2018)
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Marc A. Suchard et al.
VIRUS EVOLUTION (2018)
Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis
T. Inns et al.
EPIDEMIOLOGY AND INFECTION (2017)
Global poultry production: current state and future outlook and challenges
A. Mottet et al.
WORLDS POULTRY SCIENCE JOURNAL (2017)
The rise and decline in Salmonella enterica serovar Enteritidis outbreaks attributed to egg-containing foods in the United States, 1973-2009
A. P. Wright et al.
EPIDEMIOLOGY AND INFECTION (2016)
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings
Nicholas A. Feasey et al.
NATURE GENETICS (2016)
PHASTER: a better, faster version of the PHAST phage search tool
David Arndt et al.
NUCLEIC ACIDS RESEARCH (2016)
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
Andrew Rambaut et al.
VIRUS EVOLUTION (2016)
Sustainable development perspectives of poultry production
M. Vaarst et al.
WORLDS POULTRY SCIENCE JOURNAL (2015)
Comparative Analysis of Subtyping Methods against a Whole-Genome-Sequencing Standard for Salmonella enterica Serotype Enteritidis
Xiangyu Deng et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2015)
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Nicholas J. Croucher et al.
NUCLEIC ACIDS RESEARCH (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Emergence and clonal dissemination of Salmonella enterica serovar Enteritidis causing salmonellosis in Mauritius
Mohammad I. Issack et al.
JOURNAL OF INFECTION IN DEVELOPING COUNTRIES (2014)
Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2
Philippe Lemey et al.
PLOS PATHOGENS (2014)
Applied Animal Genomics: Results from the Field
Alison L. Van Eenennaam et al.
ANNUAL REVIEW OF ANIMAL BIOSCIENCES, VOL 2 (2014)
Genomic Epidemiology of Salmonella enterica Serotype Enteritidis based on Population Structure of Prevalent Lineages
Xiangyu Deng et al.
EMERGING INFECTIOUS DISEASES (2014)
Molecular typing of Salmonella enterica serovar Enteritidis isolates from food-producing animals in Japan by multilocus variable-number tandem repeat analysis: evidence of clonal dissemination and replacement
Ayumi Kobayashi et al.
ACTA VETERINARIA SCANDINAVICA (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Overview on the Performance of Brazilian Broilers (1990 to 2009)
I. S. Patricio et al.
BRAZILIAN JOURNAL OF POULTRY SCIENCE (2012)
Genetic diversity, virulence genes and antimicrobial resistance of Salmonella Enteritidis isolated from food and humans over a 24-year period in Brazil
Fabio Campioni et al.
FOOD MICROBIOLOGY (2012)
Surveillance of Salmonella Prevalence in Animal Feeds and Characterization of the Salmonella Isolates by Serotyping and Antimicrobial Susceptibility
X. Li et al.
FOODBORNE PATHOGENS AND DISEASE (2012)
Multidrug resistant clones of Salmonella Infantis of broiler origin in Europe
N. Nogrady et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Population Dynamics of Salmonella enterica Serotypes in Commercial Egg and Poultry Production
Steven L. Foley et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection
Wangang Xie et al.
SYSTEMATIC BIOLOGY (2011)
Salmonella spp. Infection in Imported 1-Day-Old Chicks, Ducklings, and Turkey Poults: A Public Health Risk
Kamelia M. Osman et al.
FOODBORNE PATHOGENS AND DISEASE (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
Isolation of different serovars of Salmonella enterica from wild birds in Great Britain between 1995 and 2003
T. W. Pennycott et al.
VETERINARY RECORD (2006)
Egg quality assurance programs and egg-associated Salmonella Enteritidis infections, United States
GA Mumma et al.
EMERGING INFECTIOUS DISEASES (2004)