4.8 Article

Learning mutational signatures and their multidimensional genomic properties with TensorSignatures

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Mutational signature in colorectal cancer caused by genotoxic pks+E. coli

Cayetano Pleguezuelos-Manzano et al.

NATURE (2020)

Article Multidisciplinary Sciences

Pan-cancer analysis of whole genomes

Peter J. Campbell et al.

NATURE (2020)

Article Multidisciplinary Sciences

The repertoire of mutational signatures in human cancer

Ludmil B. Alexandrov et al.

NATURE (2020)

Article Multidisciplinary Sciences

Patterns of somatic structural variation in human cancer genomes

Yilong Li et al.

NATURE (2020)

Article Genetics & Heredity

APOBEC3-dependent kataegis and TREX1-driven chromothripsis during telomere crisis

John Maciejowski et al.

NATURE GENETICS (2020)

Article Biochemical Research Methods

Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models

Tyler Funnell et al.

PLOS COMPUTATIONAL BIOLOGY (2019)

Article Biochemistry & Molecular Biology

A Compendium of Mutational Signatures of Environmental Agents

Jill E. Kucab et al.

Article Biotechnology & Applied Microbiology

SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events

Erik N. Bergstrom et al.

BMC GENOMICS (2019)

Article Multidisciplinary Sciences

Pan-cancer whole-genome analyses of metastatic solid tumours

Peter Priestley et al.

NATURE (2019)

Article Genetics & Heredity

The mutational footprints of cancer therapies

Oriol Pich et al.

NATURE GENETICS (2019)

Article Multidisciplinary Sciences

5-Fluorouracil treatment induces characteristic T>G mutations in human cancer

Sharon Christenser et al.

NATURE COMMUNICATIONS (2019)

Article Biochemistry & Molecular Biology

COSMIC: the Catalogue Of Somatic Mutations In Cancer

John G. Tate et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

Mutational signatures of DNA mismatch repair deficiency in C. elegans and human cancers

Bettina Meier et al.

GENOME RESEARCH (2018)

Article Genetics & Heredity

Copy number signatures and mutational processes in ovarian carcinoma

Geoff Macintyre et al.

NATURE GENETICS (2018)

Article Biotechnology & Applied Microbiology

Mutational signature distribution varies with DNA replication timing and strand asymmetry

Marketa Tomkova et al.

GENOME BIOLOGY (2018)

Article Multidisciplinary Sciences

Whole-genome landscapes of major melanoma subtypes

Nicholas K. Hayward et al.

NATURE (2017)

Article Multidisciplinary Sciences

A molecular portrait of microsatellite instability across multiple cancers

Isidro Cortes-Ciriano et al.

NATURE COMMUNICATIONS (2017)

Article Biochemistry & Molecular Biology

Insertions and Deletions Target Lineage-Defining Genes in Human Cancers

Marcin Imielinski et al.

Article Biochemistry & Molecular Biology

Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair

Nicholas J. Haradhvala et al.

Article Multidisciplinary Sciences

The nature of mutations induced by replication-transcription collisions

T. Sabari Sankar et al.

NATURE (2016)

Article Multidisciplinary Sciences

Nucleotide excision repair is impaired by binding of transcription factors to DNA

Radhakrishnan Sabarinathan et al.

NATURE (2016)

Article Multidisciplinary Sciences

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

Serena Nik-Zainal et al.

NATURE (2016)

Article Multidisciplinary Sciences

Mutational signatures associated with tobacco smoking in human cancer

Ludmil B. Alexandrov et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

The topography of mutational processes in breast cancer genomes

Sandro Morganella et al.

NATURE COMMUNICATIONS (2016)

Article Multidisciplinary Sciences

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje et al.

NATURE (2015)

Article Biotechnology & Applied Microbiology

Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair

Paz Polak et al.

NATURE BIOTECHNOLOGY (2014)

Review Oncology

Hypermutation in human cancer genomes: footprints and mechanisms

Steven A. Roberts et al.

NATURE REVIEWS CANCER (2014)

Article Multidisciplinary Sciences

Signatures of mutational processes in human cancer

Ludmil B. Alexandrov et al.

NATURE (2013)

Article Genetics & Heredity

An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers

Steven A. Roberts et al.

NATURE GENETICS (2013)

Article Cell Biology

Deciphering Signatures of Mutational Processes Operative in Human Cancer

Ludmil B. Alexandrov et al.

CELL REPORTS (2013)

Article Biotechnology & Applied Microbiology

EMu: probabilistic inference of mutational processes and their localization in the cancer genome

Andrej Fischer et al.

GENOME BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Mutational Processes Molding the Genomes of 21 Breast Cancers

Serena Nik-Zainal et al.

Article Multidisciplinary Sciences

Chromatin organization is a major influence on regional mutation rates in human cancer cells

Benjamin Schuster-Boeckler et al.

NATURE (2012)

Article Multidisciplinary Sciences

A small-cell lung cancer genome with complex signatures of tobacco exposure

Erin D. Pleasance et al.

NATURE (2010)

Article Multidisciplinary Sciences

A comprehensive catalogue of somatic mutations from a human cancer genome

Erin D. Pleasance et al.

NATURE (2010)

Article Multidisciplinary Sciences

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

R. Scott Hansen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Identification of higher-order functional domains in the human ENCODE regions

Robert E. Thurman et al.

GENOME RESEARCH (2007)