4.8 Article

Signatures of mitonuclear coevolution in a warbler species complex

Related references

Note: Only part of the references are listed.
Article Remote Sensing

Aerodynamics Effect of Holes in UAV Wings Modified for VTOL Capability

Laith S. Sawaqed et al.

Summary: This research explores the possibility of modifying the X8 Skywalker from a fixed-wing unmanned aerial vehicle into a convertiplane. Computational fluid dynamics and wind tunnel experiments were conducted to analyze the performance of different wing configurations. The results indicate that the proposed modifications can generate enough lift despite reducing the wing area, with the filleted hole configuration demonstrating less drag and turbulence effects at low angles of attack.

DRONE SYSTEMS AND APPLICATIONS (2022)

Article Biochemistry & Molecular Biology

pixy: Unbiased estimation of nucleotide diversity and divergence in the presence of missing data

Katharine L. Korunes et al.

Summary: Population genetic analyses often use summary statistics such as pi and d(XY) to describe genetic variation patterns. However, biases can be introduced due to missing data, which can lead to underestimation of genetic diversity within and between populations. In this study, a user-friendly UNIX command line utility, pixy, is introduced to address this issue and provide unbiased estimates of pi and d(XY) regardless of the amount or form of missing data.

MOLECULAR ECOLOGY RESOURCES (2021)

Article Biochemistry & Molecular Biology

Pigmentation Genes Show Evidence of Repeated Divergence and Multiple Bouts of Introgression in Setophaga Warblers

Marcella D. Baiz et al.

Summary: Genomic analysis of 36 warbler species in North, Central, and South America reveals the importance of pigment genes, such as ASIP and BCO2, in driving plumage diversification. Variations in these genes are associated with differences in melanin and carotenoid distribution in the species' plumages, reflecting a mix of independent evolution and past hybridization events. Introgression of the BCO2 gene between species demonstrates a unique example of carotenoid gene transfer among vertebrates.

CURRENT BIOLOGY (2021)

Article Multidisciplinary Sciences

Strong selective effects of mitochondrial DNA on the nuclear genome

Timothy M. Healy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Review Physiology

The Link Between the Mitochondrial Fatty Acid Oxidation Derangement and Kidney Injury

Lara Console et al.

FRONTIERS IN PHYSIOLOGY (2020)

Article Ecology

Cross-decades stability of an avian hybrid zone

Silu Wang et al.

JOURNAL OF EVOLUTIONARY BIOLOGY (2019)

Article Biochemistry & Molecular Biology

UniProt: a worldwide hub of protein knowledge

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

A comparison of genomic islands of differentiation across three young avian species pairs

Darren E. Irwin et al.

MOLECULAR ECOLOGY (2018)

Article Genetics & Heredity

Evolved genetic and phenotypic differences due to mitochondrial-nuclear interactions

Tara Z. Baris et al.

PLOS GENETICS (2017)

Article Multidisciplinary Sciences

The genomic mosaicism of hybrid speciation

Tore O. Elgvin et al.

SCIENCE ADVANCES (2017)

Review Evolutionary Biology

The Sex Specific Genetic Variation of Energetics in Bank Voles, Consequences of Introgression?

Zbyszek Boratynski et al.

EVOLUTIONARY BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Ancient hybridization and genomic stabilization in a swordtail fish

Molly Schumer et al.

MOLECULAR ECOLOGY (2016)

Article Biochemical Research Methods

PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels

Yongwook Choi et al.

BIOINFORMATICS (2015)

Article Evolutionary Biology

Mitochondrial Involvement in Vertebrate Speciation? The Case of Mito-nuclear Genetic Divergence in Chameleons

Dan Bar-Yaacov et al.

GENOME BIOLOGY AND EVOLUTION (2015)

Article Computer Science, Interdisciplinary Applications

Fitting Linear Mixed-Effects Models Using lme4

Douglas Bates et al.

JOURNAL OF STATISTICAL SOFTWARE (2015)

Article Multidisciplinary Sciences

Greenlandic Inuit show genetic signatures of diet and climate adaptation

Matteo Fumagalli et al.

SCIENCE (2015)

Article Ecology

POPART: full-feature software for haplotype network construction

Jessica W. Leigh et al.

METHODS IN ECOLOGY AND EVOLUTION (2015)

Article Genetics & Heredity

A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations

Florian J. Clemente et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Review Ecology

Cytonuclear Genomic Interactions and Hybrid Breakdown

Ronald S. Burton et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 44 (2013)

Review Ecology

Geographic Mode of Speciation and Genomic Divergence

Jeffrey L. Feder et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 44 (2013)

Article Biochemistry & Molecular Biology

MITOS: Improved de novo metazoan mitochondrial genome annotation

Matthias Bernt et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)

Article Biology

Elevated oxidative damage is correlated with reduced fitness in interpopulation hybrids of a marine copepod

Felipe S. Barreto et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)

Article Biochemical Research Methods

A high-performance computing toolset for relatedness and principal component analysis of SNP data

Xiuwen Zheng et al.

BIOINFORMATICS (2012)

Article Meteorology & Atmospheric Sciences

ClimateWNA-High-Resolution Spatial Climate Data for Western North America

Tongli Wang et al.

JOURNAL OF APPLIED METEOROLOGY AND CLIMATOLOGY (2012)

Article Biochemistry & Molecular Biology

Comparative Genomics Reveals Adaptive Protein Evolution and a Possible Cytonuclear Incompatibility between European and American Eels

Pierre-Alexandre Gagnaire et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Review Biochemistry & Molecular Biology

A disproportionate role for mtDNA in Dobzhansky-Muller incompatibilities?

Ronald S. Burton et al.

MOLECULAR ECOLOGY (2012)

Article Multidisciplinary Sciences

Predicting the Functional Effect of Amino Acid Substitutions and Indels

Yongwook Choi et al.

PLOS ONE (2012)

Article Genetics & Heredity

Detecting Individual Sites Subject to Episodic Diversifying Selection

Ben Murrell et al.

PLOS GENETICS (2012)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Bayesian estimation of genomic clines

Zachariah Gompert et al.

MOLECULAR ECOLOGY (2011)

Article Multidisciplinary Sciences

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

Robert J. Elshire et al.

PLOS ONE (2011)

Review Genetics & Heredity

The Mitochondrial Proteome and Human Disease

Sarah E. Calvo et al.

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 11 (2010)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna et al.

GENOME RESEARCH (2010)

Article Endocrinology & Metabolism

A general introduction to the biochemistry of mitochondrial fatty acid β-oxidation

Sander Michel Houten et al.

JOURNAL OF INHERITED METABOLIC DISEASE (2010)

Review Biochemistry & Molecular Biology

Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America

Aaron B. A. Shafer et al.

MOLECULAR ECOLOGY (2010)

Article Multidisciplinary Sciences

Ongoing Movement of the Hermit Warbler X Townsend's Warbler Hybrid Zone

Meade Krosby et al.

PLOS ONE (2010)

Article Biotechnology & Applied Microbiology

Molecular evolution of genes in avian genomes

Kiwoong Nam et al.

GENOME BIOLOGY (2010)

Review Plant Sciences

The crucial role of plant mitochondria in orchestrating drought tolerance

Owen K. Atkin et al.

ANNALS OF BOTANY (2009)

Article Multidisciplinary Sciences

Natural selection in action during speciation

Sara Via

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biology

A 2000 km genetic wake yields evidence for northern glacial refugia and hybrid zone movement in a pair of songbirds

Meade Krosby et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)

Article Ecology

Ecological selection maintains cytonuclear incompatibilities in hybridizing sunflowers

Julianno B. M. Sambatti et al.

ECOLOGY LETTERS (2008)

Article Biochemistry & Molecular Biology

NCBIBLAST: a better web interface

Mark Johnson et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

GenABEL: an R library for genome-wide association analysis

Yurii S. Aulchenko et al.

BIOINFORMATICS (2007)

Review Biochemistry & Molecular Biology

The incomplete natural history of mitochondria

JWO Ballard et al.

MOLECULAR ECOLOGY (2004)

Article Biology

Ice sheets promote speciation in boreal birds

JT Weir et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2004)

Article Biochemical Research Methods

TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees

S Woolley et al.

BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

The role of hybridization in evolution

NH Barton

MOLECULAR ECOLOGY (2001)

Review Ecology

The genic view of the process of speciation

CI Wu

JOURNAL OF EVOLUTIONARY BIOLOGY (2001)

Review Multidisciplinary Sciences

The genetic legacy of the Quaternary ice ages

G Hewitt

NATURE (2000)