4.8 Article

Single-cell transcriptomic analysis of bloodstream Trypanosoma brucei reconstructs cell cycle progression and developmental quorum sensing

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data

Massimo Andreatta et al.

Summary: STACAS is a computational method that can accurately align scRNA-seq datasets composed of partially overlapping cell populations by correcting batch effects, filtering aberrant integration anchors with a quantitative distance measure, and constructing optimal guide trees for integration.

BIOINFORMATICS (2021)

Article Multidisciplinary Sciences

Single-cell RNA sequencing of Trypanosoma brucei from tsetse salivary glands unveils metacyclogenesis and identifies potential transmission blocking antigens

Aurelien Vigneron et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

Trajectory-based differential expression analysis for single-cell sequencing data

Koen Van den Berge et al.

NATURE COMMUNICATIONS (2020)

Software Review Biochemical Research Methods

Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data

Shun H. Yip et al.

BRIEFINGS IN BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

Comprehensive Integration of Single-Cell Data

Tim Stuart et al.

Article Biochemistry & Molecular Biology

Oligopeptide Signaling through TbGPR89 Drives Trypanosome Quorum Sensing

Federico Rojas et al.

Review Cell Biology

The cell biology of quiescent yeast - a diversity of individual scenarios

Isabelle Sagot et al.

JOURNAL OF CELL SCIENCE (2019)

Article Biotechnology & Applied Microbiology

Visualizing structure and transitions in high-dimensional biological data

Kevin R. Moon et al.

NATURE BIOTECHNOLOGY (2019)

Article Biotechnology & Applied Microbiology

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Kelly Street et al.

BMC GENOMICS (2018)

Review Biochemistry & Molecular Biology

Single-cell RNA sequencing: Technical advancements and biological applications

Eva Hedlund et al.

MOLECULAR ASPECTS OF MEDICINE (2018)

Review Urology & Nephrology

Single-cell RNA sequencing for the study of development, physiology and disease

S. Steven Potter

NATURE REVIEWS NEPHROLOGY (2018)

Article Multidisciplinary Sciences

Genome organization and DNA accessibility control antigenic variation in trypanosomes

Laura S. M. Mueller et al.

NATURE (2018)

Article Multidisciplinary Sciences

Massively parallel digital transcriptional profiling of single cells

Grace X. Y. Zheng et al.

NATURE COMMUNICATIONS (2017)

Article Biochemistry & Molecular Biology

Characterization of RBP9 and RBP10, two developmentally regulated RNA-binding proteins in Trypanosoma brucei

Luis Miguel De Pablos et al.

OPEN BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Diverged composition and regulation of the Trypanosoma brucei origin recognition complex that mediates DNA replication initiation

Catarina A. Marques et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Parasitology

The animal trypanosomiases and their chemotherapy: a review

Federica Giordani et al.

PARASITOLOGY (2016)

Article Biotechnology & Applied Microbiology

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts

Aaron T. L. Lun et al.

GENOME BIOLOGY (2016)

Article Biotechnology & Applied Microbiology

Classification of low quality cells from single-cell RNA-seq data

Tomislav Ilicic et al.

GENOME BIOLOGY (2016)

Review Biochemistry & Molecular Biology

The Technology and Biology of Single-Cell RNA Sequencing

Aleksandra A. Kolodziejczyk et al.

MOLECULAR CELL (2015)

Article Biochemistry & Molecular Biology

Capturing the variant surface glycoprotein repertoire (the VSGnome) of Trypanosoma brucei Lister 427

George A. M. Cross et al.

MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2014)

Article Multidisciplinary Sciences

Genome-wide dissection of the quorum sensing signalling pathway in Trypanosoma brucei

Binny M. Mony et al.

NATURE (2014)

Review Cell Biology

A quiescent path to plant longevity

Jefri Heyman et al.

TRENDS IN CELL BIOLOGY (2014)

Review Immunology

Bloodstream form pre-adaptation to the tsetse fly in Trypanosoma brucei

Eva Rico et al.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

Regulation and spatial organization of PCNA in Trypanosoma brucei

Doris Kaufmann et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2012)

Review Microbiology

The essence of yeast quiescence

Claudio De Virgilio

FEMS MICROBIOLOGY REVIEWS (2012)

Article Microbiology

Transmission Stages Dominate Trypanosome Within-Host Dynamics during Chronic Infections

Paula MacGregor et al.

CELL HOST & MICROBE (2011)

Article Biochemistry & Molecular Biology

Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania

Matthew B. Rogers et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

A Zinc Finger Protein, TbZC3H20, Stabilizes Two Developmentally Regulated mRNAs in Trypanosomes

Alexandra S. Ling et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

Article Multidisciplinary Sciences

The Cell Cycle Regulated Transcriptome of Trypanosoma brucei

Stuart K. Archer et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Fran Supek et al.

PLOS ONE (2011)

Article Biochemistry & Molecular Biology

The Trypanosoma brucei Life Cycle Switch TbPTP1 Is Structurally Conserved and Dephosphorylates the Nucleolar Protein NOPP44/46

Seemay Chou et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

TriTrypDB: a functional genomic resource for the Trypanosomatidae

Martin Aslett et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Public, Environmental & Occupational Health

The Atlas of human African trypanosomiasis: a contribution to global mapping of neglected tropical diseases

Pere P. Simarro et al.

INTERNATIONAL JOURNAL OF HEALTH GEOGRAPHICS (2010)

Article Biotechnology & Applied Microbiology

Widespread variation in transcript abundance within and across developmental stages of Trypanosoma brucei

Bryan C. Jensen et al.

BMC GENOMICS (2009)

Article Biochemistry & Molecular Biology

Hydroxyurea-induced synchronisation of bloodstream stage Trypanosoma brucei

Glynn R. Forsythe et al.

MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2009)

Article Multidisciplinary Sciences

A surface transporter family conveys the trypanosome differentiation signal

Samuel Dean et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

Differential expression of glycosomal and mitochondrial proteins in the two major life-cycle stages of Trypanosoma brucei

Didier Vertommen et al.

MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2008)

Review Genetics & Heredity

Deconstructing stem cell self-renewal: genetic insights into cell-cycle regulation

Keith W. Orford et al.

NATURE REVIEWS GENETICS (2008)

Review Microbiology

The cell biology of Trypanosoma brucei differentiation

Katelyn Fenn et al.

CURRENT OPINION IN MICROBIOLOGY (2007)

Article Biochemistry & Molecular Biology

The extraordinary mitochondrion and unusual citric acid cycle in Trypanosoma brucei

JJ van Hellemond et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2005)

Article Multidisciplinary Sciences

The genome of the African trypanosome Trypanosoma brucei

M Berriman et al.

SCIENCE (2005)

Article Biochemistry & Molecular Biology

Proline metabolism in procyclic Trypanosoma brucei is down-regulated in the presence of glucose

N Lamour et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2005)

Review Microbiology

Sleeping beauty:: Quiescence in Saccharomyces cerevisiae

JV Gray et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2004)

Article Biochemistry & Molecular Biology

Stage-specific differences in cell cycle control in Trypanosoma brucei revealed by RNA interference of a mitotic cyclin

TC Hammarton et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2003)

Article Biochemistry & Molecular Biology

A PHO80-like cyclin and a B-type cyclin control the cell cycle of the procyclic form of Trypanosoma brucei

ZY Li et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2003)

Article Biochemistry & Molecular Biology

A novel CCCH protein which modulates differentiation of Trypanosoma brucei to its procyclic form

EF Hendriks et al.

EMBO JOURNAL (2001)