Related references
Note: Only part of the references are listed.The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr
Liane Dupont et al.
CELL HOST & MICROBE (2021)
Network-Based Analysis of OMICs Data to Understand the HIV-Host Interaction
Sergey Ivanov et al.
FRONTIERS IN MICROBIOLOGY (2020)
Evolution of a concept: From accessory protein to key virulence factor, the case of HIV-1 Vpr
Clementine Wallet et al.
BIOCHEMICAL PHARMACOLOGY (2020)
Identification of the initial nucleocapsid recognition element in the HIV-1 RNA packaging signal
Pengfei Ding et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
HIV-1 Vpr antagonizes innate immune activation by targeting karyopherin-mediated NF-κB/IRF3 nuclear transport
Hataf Khan et al.
ELIFE (2020)
Promiscuous Targeting of Cellular Proteins by Vpr Drives Systems-Level Proteomic Remodeling in HIV-1 Infection
Edward J. D. Greenwood et al.
CELL REPORTS (2019)
HIV-1 Vpu is a potent transcriptional suppressor of NF-κB-elicited antiviral immune responses
Simon Langer et al.
ELIFE (2019)
Interferon-Stimulated Genes: What Do They All Do?
John W. Schoggins
ANNUAL REVIEW OF VIROLOGY, VOL 6, 2019 (2019)
Vpr and Its Cellular Interaction Partners: R We There Yet?
Helena Fabryova et al.
CELLS (2019)
Highly Attenuated Infection With a Vpr-Deleted Molecular Clone of Human Immunodeficiency Virus-1
Ayub Ali et al.
JOURNAL OF INFECTIOUS DISEASES (2018)
Vpr Targets TET2 for Degradation by CRL4(VprBP) E3 Ligase to Sustain IL-6 Expression and Enhance HIV-1 Replication
Lei Lv et al.
MOLECULAR CELL (2018)
HIV-2/SIV viral protein X counteracts HUSH repressor complex
Ghina Chougui et al.
NATURE MICROBIOLOGY (2018)
Primate immunodeficiency virus proteins Vpx and Vpr counteract transcriptional repression of proviruses by the HUSH complex
Leonid Yurkovetskiy et al.
NATURE MICROBIOLOGY (2018)
Trivalent RING Assembly on Retroviral Capsids Activates TRIM5 Ubiquitination and Innate Immune Signaling
Adam J. Fletcher et al.
CELL HOST & MICROBE (2018)
HIV-1 Vpr Reprograms CLR4DCAF1 E3 Ubiquitin Ligase to Antagonize Exonuclease 1-Mediated Restriction of HIV-1 Infection
Junpeng Yan et al.
MBIO (2018)
Virion-Associated Vpr Alleviates a Postintegration Block to HIV-1 Infection of Dendritic Cells
Caitlin M. Miller et al.
JOURNAL OF VIROLOGY (2017)
HIV-1 Vpr Protein Induces Proteasomal Degradation of Chromatin-associated Class I HDACs to Overcome Latent Infection of Macrophages
Bizhan Romani et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2016)
Sensing of HIV-1 Infection in Tzm-bl Cells with Reconstituted Expression of STING
Maud Trotard et al.
JOURNAL OF VIROLOGY (2016)
The DDB1-DCAF1-Vpr-UNG2 crystal structure reveals how HIV-1 Vpr steers human UNG2 toward destruction
Ying Wu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
The DDB1-DCAF1-Vpr-UNG2 crystal structure reveals how HIV-1 Vpr steers human UNG2 toward destruction
Ying Wu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
HIV Triggers a cGAS-Dependent, Vpu- and Vpr-Regulated Type I Interferon Response in CD4+ T Cells
Jolien Vermeire et al.
CELL REPORTS (2016)
HIV-1 Vpr reactivates latent HIV-1 provirus by inducing depletion of class I HDACs on chromatin
Bizhan Romani et al.
SCIENTIFIC REPORTS (2016)
PQBP1 Is a Proximal Sensor of the cGAS-Dependent Innate Response to HIV-1
Sunnie M. Yoh et al.
CELL (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
limma powers differential expression analyses for RNA-sequencing and microarray studies
Matthew E. Ritchie et al.
NUCLEIC ACIDS RESEARCH (2015)
Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats
Scott Sherrill-Mix et al.
RETROVIROLOGY (2015)
UpSet: Visualization of Intersecting Sets
Alexander Lex et al.
IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS (2014)
HIV-1 Vpr Induces Interferon-Stimulated Genes in Human Monocyte-Derived Macrophages
Muhammad Atif Zahoor et al.
PLOS ONE (2014)
HIV-1 Infection Causes a Down-Regulation of Genes Involved in Ribosome Biogenesis
Claudia L. Kleinman et al.
PLOS ONE (2014)
HIV-1 Vpr stimulates NF-κB and AP-1 signaling by activating TAK1
Ruikang Liu et al.
RETROVIROLOGY (2014)
IFI16 DNA Sensor Is Required for Death of Lymphoid CD4 T Cells Abortively Infected with HIV
Kathryn M. Monroe et al.
SCIENCE (2014)
HIV-1 Vpr-a still enigmatic multitasker
Carolin A. Guenzel et al.
FRONTIERS IN MICROBIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Inhibition of NF-κB activity by HIV-1 Vpr is dependent on Vpr binding protein
Michael Kogan et al.
JOURNAL OF CELLULAR PHYSIOLOGY (2013)
HIV-1 evades innate immune recognition through specific cofactor recruitment
Jane Rasaiyaah et al.
NATURE (2013)
HIV-1 Vpr Induces the Degradation of ZIP and sZIP, Adaptors of the NuRD Chromatin Remodeling Complex, by Hijacking DCAF1/VprBP
Claire Maudet et al.
PLOS ONE (2013)
Cyclic GMP-AMP Synthase Is an Innate Immune Sensor of HIV and Other Retroviruses
Daxing Gao et al.
SCIENCE (2013)
Software for Computing and Annotating Genomic Ranges
Michael Lawrence et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
24 Hours in the Life of HIV-1 in a T Cell Line
Pejman Mohammadi et al.
PLOS PATHOGENS (2013)
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
Jeffrey T. Leek et al.
BIOINFORMATICS (2012)
Generation of Transmitted/Founder HIV-1 Infectious Molecular Clones and Characterization of Their Replication Capacity in CD4 T Lymphocytes and Monocyte-Derived Macrophages
Christina Ochsenbauer et al.
JOURNAL OF VIROLOGY (2012)
Exon Level Transcriptomic Profiling of HIV-1-Infected CD4+ T Cells Reveals Virus-Induced Genes and Host Environment Favorable for Viral Replication
Michael Imbeault et al.
PLOS PATHOGENS (2012)
Analysis of HIV-1 Expression Level and Sense of Transcription by High-Throughput Sequencing of the Infected Cell
Gregory Lefebvre et al.
JOURNAL OF VIROLOGY (2011)
TRIM5 is an innate immune sensor for the retrovirus capsid lattice
Thomas Pertel et al.
NATURE (2011)
Next-Generation Sequencing Reveals HIV-1-Mediated Suppression of T Cell Activation and RNA Processing and Regulation of Noncoding RNA Expression in a CD4+ T Cell Line
Stewart T. Chang et al.
MBIO (2011)
Innate Sensing of HIV-Infected Cells
Alice Lepelley et al.
PLOS PATHOGENS (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Characterization of the Alpha Interferon-Induced Postentry Block to HIV-1 Infection in Primary Human Macrophages and T Cells
Caroline Goujon et al.
JOURNAL OF VIROLOGY (2010)
Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips
Wei Shi et al.
NUCLEIC ACIDS RESEARCH (2010)
Genome-Wide mRNA Expression Correlates of Viral Control in CD4+T-Cells from HIV-1-Infected Individuals
Margalida Rotger et al.
PLOS PATHOGENS (2010)
Viral Genetic Determinants of Nonprogressive HIV Type 1 Subtype C Infection in Antiretroviral Drug-Naive Children
D. B. Tzitzivacos et al.
AIDS RESEARCH AND HUMAN RETROVIRUSES (2009)
Testing significance relative to a fold-change threshold is a TREAT
Davis J. McCarthy et al.
BIOINFORMATICS (2009)
Human Immunodeficiency Virus Type 1 Mediates Global Disruption of Innate Antiviral Signaling and Immune Defenses within Infected Cells
Brian P. Doehle et al.
JOURNAL OF VIROLOGY (2009)
Identification and characterisation of transmitted and early founder virus envelopes in primary HIV-1 infection
Brandon F. Keele et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Vaccinia virus uses macropinocytosis and apoptotic mimicry to enter host cells
Jason Mercer et al.
SCIENCE (2008)
HIV-1 accessory proteins VPR and Vif modulate antiviral response by targeting IRF-3 for degradation
Atsushi Okumura et al.
VIROLOGY (2008)
Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R
Peter Langfelder et al.
BIOINFORMATICS (2008)
Chronic CD4+ T-cell activation and depletion in human immunodeficiency virus type 1 infection:: Type I interferon-mediated disruption of T-cell dynamics
Ahmad R. Sedaghat et al.
JOURNAL OF VIROLOGY (2008)
DDB1 and Cu14A are required for human immunodeficiency virus type 1 vpr-induced G2 arrest
Lindi Tan et al.
JOURNAL OF VIROLOGY (2007)
The HIV1 protein vpr acts to promote G2 cell cycle arrest by engaging a DDB1 and Cullin4A-containing ubiquitin ligase complex using VprBP/DCAF1 as an adaptor
Xiaoyun Wen et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Lentiviral Vpr usurps Cul4-DDB1[VprBP] E3 ubiquitin ligase to modulate cell cycle
Kasia Hrecka et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
HIV-1 Vpr-mediated G2 arrest involves the DDB1-CUL4AVPRBP E3 ubiquitin ligase
Jean-Philippe Belzile et al.
PLOS PATHOGENS (2007)
g:Profiler -: a web-based toolset for functional profiling of gene lists from large-scale experiments
Jueri Reimand et al.
NUCLEIC ACIDS RESEARCH (2007)
HIV-1 Vpr function is mediated by interaction with the damage-specific DNA-binding protein DDB1
Baerbel Schroefelbauer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
HIV1 Vpr arrests the cell cycle by recruiting DCAF1/VprBP, a receptor of the Cul4-DDB1 ubiquitin ligase
Erwann Le Rouzic et al.
CELL CYCLE (2007)
Distinct transcriptional profiles in ex vivo CD4(+) and CD8(+) T cells are established early in human immunodeficiency virus type 1 infection and are characterized by a chronic interferon response as well as extensive transcriptional changes in CD8(+) T cells
Martin D. Hyrcza et al.
JOURNAL OF VIROLOGY (2007)
Microarray data on gene modulation by HIV-1 in immune cells: 2000-2006
Malavika S. Giri et al.
JOURNAL OF LEUKOCYTE BIOLOGY (2006)
Empirical array quality weights in the analysis of microarray data
Matthew E. Ritchie et al.
BMC BIOINFORMATICS (2006)
R5 and X4 HIV envelopes induce distinct gene expression profiles in primary peripheral blood mononuclear cells
C Cicala et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
The HIV-1 Vpr and glucocorticoid receptor complex is a gain-of-function interaction that prevents the nuclear localization of PARP-1
K Muthumani et al.
NATURE CELL BIOLOGY (2006)
Nef induces multiple genes involved in cholesterol synthesis and uptake in human immunodeficiency virus type 1-infected T cells
AB van 't Wout et al.
JOURNAL OF VIROLOGY (2005)
Gut mucosal T cell responses and gene expression correlate with protection against disease in long-term HIV-1-infected nonprogressors
S Sankaran et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Genome-wide analysis of human kinases in clathrin- and caveolae/raft-mediated endocytosis
L Pelkmans et al.
NATURE (2005)
Dynamics of HIV-1 recombination in its natural target cells
DN Levy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Further investigation of simian immunodeficiency virus vif function in human cells
NC Gaddis et al.
JOURNAL OF VIROLOGY (2004)
HIV envelope induces a cascade of cell signals in non-proliferating target cells that favor virus replication
C Cicala et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Biochemical analyses of the interactions between human immunodeficiency virus type 1 Vpr and p6Gag
Y Jenkins et al.
JOURNAL OF VIROLOGY (2001)
Caveolae in the uptake and targeting of infectious agents and secreted toxins
LC Norkin
ADVANCED DRUG DELIVERY REVIEWS (2001)
Reversal of human immunodeficiency virus type 1 IIIB to a neutralization-resistant phenotype in an accidentally infected laboratory worker with a progressive clinical course
T Beaumont et al.
JOURNAL OF VIROLOGY (2001)
Cytopathogenesis and inhibition of host gene expression by RNA viruses
DS Lyles
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)
Use of calibrated viral load standards for group m subtypes of human immunodeficiency virus type 1 to assess the performance of viral RNA quantitation tests
LL Jagodzinski et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2000)