Related references
Note: Only part of the references are listed.clinker & clustermap.js: automatic generation of gene cluster comparison figures
Cameron L. M. Gilchrist et al.
BIOINFORMATICS (2021)
Agrobacterium tumefaciens Deploys a Versatile Antibacterial Strategy To Increase Its Competitiveness
Manda Yu et al.
JOURNAL OF BACTERIOLOGY (2021)
Effector loading onto the VgrG carrier activates type VI secretion system assembly
Chih-Feng Wu et al.
EMBO REPORTS (2020)
Redundancy and Specificity of Type VI Secretion vgrG Loci in Antibacterial Activity of Agrobacterium tumefaciens 1D1609 Strain
Mary Nia M. Santos et al.
FRONTIERS IN MICROBIOLOGY (2020)
Rapid diversification of wild social groups driven by toxin-immunity loci on mobile genetic elements
Christopher N. Vassallo et al.
ISME JOURNAL (2020)
Unexpected conservation and global transmission of agrobacterial virulence plasmids
Alexandra J. Weisberg et al.
SCIENCE (2020)
The β-encapsulation cage of rearrangement hotspot (Rhs) effectors is required for type VI secretion
Sonya L. Donato et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Plant-Pathogenic Agrobacterium tumefaciens Strains Have Diverse Type VI Effector-Immunity Pairs and Vary in In-Planta Competitiveness
Chih-Feng Wu et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2019)
Assembly and Subcellular Localization of Bacterial Type VI Secretion Systems
Jing Wang et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 73 (2019)
PAAR proteins act as the 'sorting hat' of the type VI secretion system
Thomas E. Wood et al.
MICROBIOLOGY-SGM (2019)
Neighbor predation linked to natural competence fosters the transfer of lard genomic regions in Vibrio cholerae
Noemie Matthey et al.
ELIFE (2019)
An onboard checking mechanism ensures effector delivery of the type VI secretion system in Vibrio cholerae
Xiaoye Liang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters
Cristian V. Crisan et al.
GENOME BIOLOGY (2019)
TagF-mediated repression of bacterial type VI secretion systems involves a direct interaction with the cytoplasmic protein Fha
Jer-Sheng Lin et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2018)
A type VI secretion system effector delivery mechanism dependent on PAAR and a chaperone-co-chaperone complex
Brianne J. Burkinshaw et al.
NATURE MICROBIOLOGY (2018)
Bacterial symbionts use a type VI secretion system to eliminate competitors in their natural host
Lauren Speare et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes
Ilia Minkin et al.
BIOINFORMATICS (2017)
GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
Guangchuang Yu et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
Adaptor Proteins of Type VI Secretion System Effectors
Daniel Unterweger et al.
TRENDS IN MICROBIOLOGY (2017)
Horizontal Gene Transfer of Functional Type VI Killing Genes by Natural Transformation
Jacob Thomas et al.
MBIO (2017)
Diversification of Type VI Secretion System Toxins Reveals Ancient Antagonism among Bee Gut Microbes
Margaret I. Steele et al.
MBIO (2017)
A Pseudomonas T6SS effector recruits PQS-containing outer membrane vesicles for iron acquisition
Jinshui Lin et al.
NATURE COMMUNICATIONS (2017)
Killing by Type VI secretion drives genetic phase separation and correlates with increased cooperation
Luke McNally et al.
NATURE COMMUNICATIONS (2017)
Sequential displacement of Type VI Secretion System effector genes leads to evolution of diverse immunity gene arrays in Vibrio cholerae
Paul C. Kirchberger et al.
SCIENTIFIC REPORTS (2017)
Microbial Herd Protection Mediated by Antagonistic Interaction in Polymicrobial Communities
Megan J. Q. Wong et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
VgrG C terminus confers the type VI effector transport specificity and is required for binding with PAAR and adaptor-effector complex
Devanand D. Bondage et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Salmonella Typhimurium utilizes a T6SS-mediated antibacterial weapon to establish in the host gut
Thibault G. Sana et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Aim, Load, Fire: The Type VI Secretion System, a Bacterial Nanoweapon
Francesca R. Cianfanelli et al.
TRENDS IN MICROBIOLOGY (2016)
Involvement of type VI secretion system in secretion of iron chelator pyoverdine in Pseudomonas taiwanensis
Wen-Jen Chen et al.
SCIENTIFIC REPORTS (2016)
Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.
Ryan R. Wick et al.
BIOINFORMATICS (2015)
Chimeric adaptor proteins translocate diverse type VI secretion system effectors in Vibrio cholerae
Daniel Unterweger et al.
EMBO JOURNAL (2015)
Identification of divergent type VI secretion effectors using a conserved chaperone domain
Xiaoye Liang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
The type VI secretion system of Vibrio cholerae fosters horizontal gene transfer
Sandrine Borgeaud et al.
SCIENCE (2015)
Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria
Dor Salomon et al.
PLOS PATHOGENS (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Draft Genome Sequence of a Phthalate Ester-Degrading Bacterium, Rhizobium sp. LMB-1, Isolated from Cultured Soil
Wen-Juan Tang et al.
GENOME ANNOUNCEMENTS (2015)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
Agrobacterium tumefaciens Deploys a Superfamily of Type VI Secretion DNase Effectors as Weapons for Interbacterial Competition In Planta
Lay-Sun Ma et al.
CELL HOST & MICROBE (2014)
Agrobacterium tumefaciens ExoR Controls Acid Response Genes and Impacts Exopolysaccharide Synthesis, Horizontal Gene Transfer, and Virulence Gene Expression
Brynn C. Heckel et al.
JOURNAL OF BACTERIOLOGY (2014)
Plant-Associated Symbiotic Burkholderia Species Lack Hallmark Strategies Required in Mammalian Pathogenesis
Annette A. Angus et al.
PLOS ONE (2014)
The Vibrio cholerae type VI secretion system employs diverse effector modules for intraspecific competition
Daniel Unterweger et al.
NATURE COMMUNICATIONS (2014)
Fha Interaction with Phosphothreonine of TssL Activates Type VI Secretion in Agrobacterium tumefaciens
Jer-Sheng Lin et al.
PLOS PATHOGENS (2014)
Reconciliation of Sequence Data and Updated Annotation of the Genome of Agrobacterium tumefaciens C58, and Distribution of a Linear Chromosome in the Genus Agrobacterium
Steven Slater et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis
Bruno Contreras-Moreira et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
PAAR-repeat proteins sharpen and diversify the type VI secretion system spike
Mikhail M. Shneider et al.
NATURE (2013)
Systematic Dissection of the Agrobacterium Type VI Secretion System Reveals Machinery and Secreted Components for Subcomplex Formation
Jer-Sheng Lin et al.
PLOS ONE (2013)
Two Independent Pathways for Self-Recognition in Proteus mirabilis Are Linked by Type VI-Dependent Export
Larissa M. Wenren et al.
MBIO (2013)
Multicellular Bacteria Deploy the Type VI Secretion System to Preemptively Strike Neighboring Cells
Christopher J. Alteri et al.
PLOS PATHOGENS (2013)
Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics
Dapeng Zhang et al.
BIOLOGY DIRECT (2012)
phytools: an R package for phylogenetic comparative biology (and other things)
Liam J. Revell
METHODS IN ECOLOGY AND EVOLUTION (2012)
Acid-Induced Type VI Secretion System Is Regulated by ExoR-ChvG/ChvI Signaling Cascade in Agrobacterium tumefaciens
Chih-Feng Wu et al.
PLOS PATHOGENS (2012)
Comparative genomics of the type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins
Pieter De Maayer et al.
BMC GENOMICS (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
Biopython: freely available Python tools for computational molecular biology and bioinformatics
Peter J. A. Cock et al.
BIOINFORMATICS (2009)
Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria
Steven C. Slater et al.
JOURNAL OF BACTERIOLOGY (2009)
An IcmF Family Protein, ImpLM, Is an Integral Inner Membrane Protein Interacting with ImpKL, and Its Walker A Motif Is Required for Type VI Secretion System-Mediated Hcp Secretion in Agrobacterium tumefaciens
Lay-Sun Ma et al.
JOURNAL OF BACTERIOLOGY (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Type VI secretion: a beginner's guide
Lewis E. H. Bingle et al.
CURRENT OPINION IN MICROBIOLOGY (2008)
Secretome analysis uncovers an hcp-family protein secreted via a type VI secretion system in Agrobacterium tumefaciens
Hung-Yi Wu et al.
JOURNAL OF BACTERIOLOGY (2008)
The road to modularity
Gunter P. Wagner et al.
NATURE REVIEWS GENETICS (2007)
In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages
Gil Shalom et al.
MICROBIOLOGY-SGM (2007)
GARD: a genetic algorithm for recombination detection
Sergei L. Kosakovsky Pond et al.
BIOINFORMATICS (2006)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
A mathematical method for determining genome divergence and species delineation using AFLP
C Mougel et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2002)
Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
KJ Livak et al.
METHODS (2001)
Natural transformation of Pseudomonas fluorescens and Agrobacterium tumefaciens in soil
S Demanèche et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)
A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R-rhizogenes, R-rubi, R-undicola and R-vitis
JM Young et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2001)