4.1 Review

Group penalized quantile regression

Journal

STATISTICAL METHODS AND APPLICATIONS
Volume 31, Issue 3, Pages 495-529

Publisher

SPRINGER HEIDELBERG
DOI: 10.1007/s10260-021-00580-8

Keywords

Coordinate descent algorithm; Group penalized regression; Heterogeneous; Pseudo-quantile; Variable selection; Quantile regression

Funding

  1. Natural Sciences and Engineering Research Council of Canada
  2. Fonds de recherche du Quebec-Sante [31110]
  3. Alzheimer's Disease Neuroimaging Initiative (ADNI) (National Institutes of Health) [U01 AG024904]
  4. DOD ADNI (Department of Defense) [W81XWH-12-2-0012]
  5. National Institute on Aging
  6. National Institute of Biomedical Imaging and Bioengineering
  7. AbbVie
  8. Alzheimer's Association
  9. Alzheimer's Drug Discovery Foundation
  10. Araclon Biotech
  11. BioClinica, Inc.
  12. Biogen
  13. Bristol-Myers Squibb Company
  14. CereSpir, Inc.
  15. Cogstate
  16. Eisai Inc.
  17. Elan Pharmaceuticals, Inc.
  18. Eli Lilly and Company
  19. EuroImmun
  20. F. Hoffmann-La Roche Ltd and its affiliated company Genentech, Inc.
  21. Fujirebio
  22. GE Healthcare
  23. IXICO Ltd.
  24. Janssen Alzheimer Immunotherapy Research and Development, LLC
  25. Johnson and Johnson Pharmaceutical Research and Development LLC
  26. Lumosity
  27. Lundbeck
  28. Merck and Co., Inc.
  29. Meso Scale Diagnostics, LLC
  30. NeuroRx Research
  31. Neurotrack Technologies
  32. Novartis Pharmaceuticals Corporation
  33. Pfizer Inc.
  34. Piramal Imaging
  35. Servier
  36. Takeda Pharmaceutical Company
  37. Transition Therapeutics
  38. Canadian Institute of Health Research

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The study presents a method for selecting grouped variables in high-dimensional linear quantile regression models, using a group penalized pseudo quantile regression (GPQR) framework that combines group-lasso and group non-convex penalties. A simple and computationally efficient group-wise descent algorithm is derived to solve the problem, and the convergence rate property is established. The GPQR approach is demonstrated in simulations and applications in genetics and omics fields.
Quantile regression models have become a widely used statistical tool in genetics and in the omics fields because they can provide a rich description of the predictors' effects on an outcome without imposing stringent parametric assumptions on the outcome-predictors relationship. This work considers the problem of selecting grouped variables in high-dimensional linear quantile regression models. We introduce a group penalized pseudo quantile regression (GPQR) framework with both group-lasso and group non-convex penalties. We approximate the quantile regression check function using a pseudo-quantile check function. Then, using the majorization-minimization principle, we derive a simple and computationally efficient group-wise descent algorithm to solve group penalized quantile regression. We establish the convergence rate property of our algorithm with the group-Lasso penalty and illustrate the GPQR approach performance using simulations in high-dimensional settings. Furthermore, we demonstrate the use of the GPQR method in a gene-based association analysis of data from the Alzheimer's Disease Neuroimaging Initiative study and in an epigenetic analysis of DNA methylation data.

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