4.8 Article

An engineered protein-phosphorylation toggle network with implications for endogenous network discovery

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Artificial signaling in mammalian cells enabled by prokaryotic two-component system

Alain Maze et al.

NATURE CHEMICAL BIOLOGY (2020)

Article Multidisciplinary Sciences

De novo design of protein logic gates

Zibo Chen et al.

SCIENCE (2020)

Review Biochemistry & Molecular Biology

Concepts in Boolean network modeling: What do they all mean?

Julian D. Schwab et al.

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)

Article Multidisciplinary Sciences

Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies

Caleb J. Bashor et al.

SCIENCE (2019)

Article Biochemical Research Methods

Guiding Biomolecular Interactions in Cells Using de Novo Protein-Protein Interfaces

Abigail J. Smith et al.

ACS SYNTHETIC BIOLOGY (2019)

Article Biology

Modeling the Bistable Dynamics of the Innate Immune System

Sarah Kadelka et al.

BULLETIN OF MATHEMATICAL BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Design of fast proteolysis-based signaling and logic circuits in mammalian cells

Tina Fink et al.

NATURE CHEMICAL BIOLOGY (2019)

Article Multidisciplinary Sciences

An ingestible bacterial-electronic system to monitor gastrointestinal health

Mark Mimee et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Programmable protein circuits in living cells

Xiaojing J. Gao et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Cellular checkpoint control using programmable sequential logic

Lauren B. Andrews et al.

SCIENCE (2018)

Review Biochemistry & Molecular Biology

The Fungal Mycobiome and Its Interaction with Gut Bacteria in the Host

Qi Hui Sam et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)

Article Multidisciplinary Sciences

Engineered erythrocytes covalently linked to antigenic peptides can protect against autoimmune disease

Novalia Pishesha et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Biochemistry & Molecular Biology

KEGG as a reference resource for gene and protein annotation

Minoru Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Two Bistable Switches Govern M Phase Entry

Satoru Mochida et al.

CURRENT BIOLOGY (2016)

Review Multidisciplinary Sciences

Control theory meets synthetic biology

Domitilla Del Vecchio et al.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2016)

Review Genetics & Heredity

Pervasive robustness in biological systems

Marie-Anne Felix et al.

NATURE REVIEWS GENETICS (2015)

Article Biochemistry & Molecular Biology

The Transcription Factor Titration Effect Dictates Level of Gene Expression

Robert C. Brewster et al.

Article Biotechnology & Applied Microbiology

A load driver device for engineering modularity in biological networks

Deepak Mishra et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemistry & Molecular Biology

Genomic mining of prokaryotic repressors for orthogonal logic gates

Brynne C. Stanton et al.

NATURE CHEMICAL BIOLOGY (2014)

Article Computer Science, Artificial Intelligence

A Neuron Model Including Gene Expression: Bistability, Long-Term Memory, etc.

Vladimir P. Zhdanov

NEURAL PROCESSING LETTERS (2014)

Review Biochemistry & Molecular Biology

Hog1: 20 years of discovery and impact

Jay L. Brewster et al.

SCIENCE SIGNALING (2014)

Review Biochemistry & Molecular Biology

Ultrasensitivity part III: cascades, bistable switches, and oscillators

James E. Ferrell et al.

TRENDS IN BIOCHEMICAL SCIENCES (2014)

Article Multidisciplinary Sciences

A bistable genetic switch based on designable DNA-binding domains

Tina Lebar et al.

NATURE COMMUNICATIONS (2014)

Article Biochemical Research Methods

Modular Extracellular Sensor Architecture for Engineering Mammalian Cell-based Devices

Nichole M. Daringer et al.

ACS SYNTHETIC BIOLOGY (2014)

Article Biochemical Research Methods

A BMP-FGF Morphogen Toggle Switch Drives the Ultrasensitive Expression of Multiple Genes in the Developing Forebrain

Shyam Srinivasan et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Review Biochemistry & Molecular Biology

Design Principles of Regulatory Networks: Searching for the Molecular Algorithms of the Cell

Wendell A. Lim et al.

MOLECULAR CELL (2013)

Article Biochemistry & Molecular Biology

Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay

Michael E. Lee et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Rapid, modular and reliable construction of complex mammalian gene circuits

Patrick Guye et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Genetics & Heredity

Response to Hyperosmotic Stress

Haruo Saito et al.

GENETICS (2012)

Article Multidisciplinary Sciences

Genetic programs constructed from layered logic gates in single cells

Tae Seok Moon et al.

NATURE (2012)

Article Biotechnology & Applied Microbiology

Ribozyme-based insulator parts buffer synthetic circuits from genetic context

Chunbo Lou et al.

NATURE BIOTECHNOLOGY (2012)

Article Biochemistry & Molecular Biology

A tunable zinc finger-based framework for Boolean logic computation in mammalian cells

Jason J. Lohmueller et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Engineering robust control of two-component system phosphotransfer using modular scaffolds

Weston R. Whitaker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemical Research Methods

SYNZIP Protein Interaction Toolbox: in Vitro and in Vivo Specifications of Heterospecific Coiled-Coil Interaction Domains

Kenneth Evan Thompson et al.

ACS SYNTHETIC BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Synthetic conversion of a graded receptor signal into a tunable, reversible switch

Santhosh Palani et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting

Tomas Cermak et al.

NUCLEIC ACIDS RESEARCH (2011)

Review Multidisciplinary Sciences

Scaffold Proteins: Hubs for Controlling the Flow of Cellular Information

Matthew C. Good et al.

SCIENCE (2011)

Review Cell Biology

Phosphorylation meets nuclear import: a review

Jonathan D. Nardozzi et al.

CELL COMMUNICATION AND SIGNALING (2010)

Editorial Material Multidisciplinary Sciences

Build life to understand it

Michael Elowitz et al.

NATURE (2010)

Review Cell Biology

Signalling ballet in space and time

Boris N. Kholodenko et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Strategies for protein synthetic biology

Raik Gruenberg et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Rapid Diversification of Cell Signaling Phenotypes by Modular Domain Recombination

Sergio G. Peisajovich et al.

SCIENCE (2010)

Article Biochemistry & Molecular Biology

A Systems-Level Analysis of Perfect Adaptation in Yeast Osmoregulation

Dale Muzzey et al.

Review Biochemistry & Molecular Biology

From Promiscuity to Precision: Protein Phosphatases Get a Makeover

David M. Virshup et al.

MOLECULAR CELL (2009)

Article Biochemical Research Methods

Enzymatic assembly of DNA molecules up to several hundred kilobases

Daniel G. Gibson et al.

NATURE METHODS (2009)

Article Multidisciplinary Sciences

RNAi in Budding Yeast

Ines A. Drinnenberg et al.

SCIENCE (2009)

Review Multidisciplinary Sciences

Biological switches and clocks

John J. Tyson et al.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2008)

Article Multidisciplinary Sciences

Signal processing by the HOG MAP kinase pathway

Pascal Hersen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

The frequency dependence of osmo-adaptation in Saccharomyces cerevisiae

Jerome T. Mettetal et al.

SCIENCE (2008)

Article Multidisciplinary Sciences

Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics

Caleb J. Bashor et al.

SCIENCE (2008)

Review Genetics & Heredity

Network motifs: theory and experimental approaches

Uri Alon

NATURE REVIEWS GENETICS (2007)

Article Biotechnology & Applied Microbiology

An engineered epigenetic transgene switch in mammalian cells

BP Kramer et al.

NATURE BIOTECHNOLOGY (2004)

Article Multidisciplinary Sciences

Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms

SH Park et al.

SCIENCE (2003)

Article Biochemistry & Molecular Biology

A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast -: art. no. e23

U Gueldener et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

Yeast vectors for integration at the HO locus

Warren P. Voth et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Multidisciplinary Sciences

A synthetic oscillatory network of transcriptional regulators

MB Elowitz et al.

NATURE (2000)

Article Multidisciplinary Sciences

Construction of a genetic toggle switch in Escherichia coli

TS Gardner et al.

NATURE (2000)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)