Related references
Note: Only part of the references are listed.The circadian clock shapes the Arabidopsis transcriptome by regulating alternative splicing and alternative polyadenylation
Yuchen Yang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2020)
HDA6-dependent histone deacetylation regulates mRNA polyadenylation in Arabidopsis
Juncheng Lin et al.
GENOME RESEARCH (2020)
Circadian oscillator proteins across the kingdoms of life: structural aspects
Reena Saini et al.
BMC BIOLOGY (2019)
Transcriptome Analysis of Diurnal Gene Expression in Chinese Cabbage
Jin A. Kim et al.
GENES (2019)
Diurnal rhythms in gene expression in the prefrontal cortex in schizophrenia
Marianne L. Seney et al.
NATURE COMMUNICATIONS (2019)
Alternative polyadenylation coordinates embryonic development, sexual dimorphism and longitudinal growth in Xenopus tropicalis
Xiang Zhou et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2019)
Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis
Qingxin Song et al.
GENOME BIOLOGY (2019)
Circadian processes in the RNA life cycle
Manon Torres et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2018)
Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation
Jing Wang et al.
BMC GENOMICS (2018)
Identification of H4K20me3-and H3K4me3-associated RNAs using CARIP-Seq expands the transcriptional and epigenetic networks of embryonic stem cells
Jiji T. Kurup et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2018)
Genome-wide atlas of alternative polyadenylation in the forage legume red clover
Manohar Chakrabarti et al.
SCIENTIFIC REPORTS (2018)
RNA polymerase II activity revealed by GRO-seq and pNET-seq in Arabidopsis
Jiafu Zhu et al.
NATURE PLANTS (2018)
Identification and Characterization of Transcripts Regulated by Circadian Alternative Polyadenylation in Mouse Liver
Kerry L. Gendreau et al.
G3-GENES GENOMES GENETICS (2018)
Alternative polyadenylation of mRNA precursors
Bin Tian et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)
Noncanonical Alternative Polyadenylation Contributes to Gene Regulation in Response to Hypoxia
Laura de Lorenzo et al.
PLANT CELL (2017)
Shining a light on the Arabidopsis circadian clock
Rachael J. Oakenfull et al.
PLANT CELL AND ENVIRONMENT (2017)
Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination
Juncheng Lin et al.
PLANT JOURNAL (2017)
Alternative Polyadenylation: Methods, Findings, and Impacts
Wei Chen et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2017)
The role of alternative Polyadenylation in regulation of rhythmic gene expression
Natalia Ptitsyna et al.
BMC GENOMICS (2017)
Roles of pre-mRNA splicing and polyadenylation in plant development
Xian Deng et al.
CURRENT OPINION IN PLANT BIOLOGY (2017)
Subcellular RNA profiling links splicing and nuclear DICER1 to alternative cleavage and polyadenylation
Jonathan Neve et al.
GENOME RESEARCH (2016)
Domestication selected for deceleration of the circadian clock in cultivated tomato
Niels A. Mueller et al.
NATURE GENETICS (2016)
MetaCycle: an integrated R package to evaluate periodicity in large scale data
Gang Wu et al.
BIOINFORMATICS (2016)
Genome-wide dynamics of alternative polyadenylation in rice
Haihui Fu et al.
GENOME RESEARCH (2016)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
Molecular mechanisms at the core of the plant circadian oscillator
Maria A. Nohales et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
Molecular mechanisms at the core of the plant circadian oscillator
Maria A. Nohales et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
Circadian Oscillation of the Lettuce Transcriptome under Constant Light and Light-Dark Conditions
Takanobu Higashi et al.
FRONTIERS IN PLANT SCIENCE (2016)
Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing
Takayuki Nojima et al.
CELL (2015)
The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site
Yongsheng Shi et al.
GENES & DEVELOPMENT (2015)
Integrating circadian dynamics with physiological processes in plants
Kathleen Greenham et al.
NATURE REVIEWS GENETICS (2015)
Systematic Profiling of Poly(A) plus Transcripts Modulated by Core 3′ End Processing and Splicing Factors Reveals Regulatory Rules of Alternative Cleavage and Polyadenylation
Wencheng Li et al.
PLOS GENETICS (2015)
Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice
Xiaohui Wu et al.
BMC GENOMICS (2014)
High throughput characterizations of poly(A) site choice in plants
Liuyin Ma et al.
METHODS (2014)
A circadian gene expression atlas in mammals: Implications for biology and medicine
Ray Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Bioinformatics Analysis of Alternative Polyadenylation in Green Alga Chlamydomonas reinhardtii Using Transcriptome Sequences from Three Different Sequencing Platforms
Zhixin Zhao et al.
G3-GENES GENOMES GENETICS (2014)
Alternative polyadenylation sites reveal distinct chromatin accessibility and histone modification in human cell lines
Che-Yu Lee et al.
BIOINFORMATICS (2013)
The nucleosome regulates the usage of polyadenylation sites in the human genome
Huan Huang et al.
BMC GENOMICS (2013)
The regulatory role of Pcf11-similar-4 (PCFS4) in Arabidopsis development by genome-wide physical interactions with target loci
Denghui Xing et al.
BMC GENOMICS (2013)
Alternative cleavage and polyadenylation: extent, regulation and function
Ran Elkon et al.
NATURE REVIEWS GENETICS (2013)
Cold-induced RNA-binding proteins regulate circadian gene expression by controlling alternative polyadenylation
Yuting Liu et al.
SCIENTIFIC REPORTS (2013)
Complexity in the Wiring and Regulation of Plant Circadian Networks
Dawn H. Nagel et al.
CURRENT BIOLOGY (2012)
(Re)inventing the Circadian Feedback Loop
Steven A. Brown et al.
DEVELOPMENTAL CELL (2012)
Deep sequencing the circadian and diurnal transcriptome of Drosophila brain
Michael E. Hughes et al.
GENOME RESEARCH (2012)
Genome-Wide Control of Polyadenylation Site Choice by CPSF30 in Arabidopsis
Patrick E. Thomas et al.
PLANT CELL (2012)
EARLY FLOWERING4 Recruitment of EARLY FLOWERING3 in the Nucleus Sustains the Arabidopsis Circadian Clock
Eva Herrero et al.
PLANT CELL (2012)
Alternative polyadenylation: New insights from global analyses
Yongsheng Shi
RNA (2012)
Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules
Sergei A. Filichkin et al.
PLOS ONE (2011)
Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation
Xiaohui Wu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Alternative polyadenylation and gene expression regulation in plants
Denghui Xing et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2011)
Circadian Rhythms and Metabolic Syndrome From Experimental Genetics to Human Disease
Eleonore Maury et al.
CIRCULATION RESEARCH (2010)
Understanding mechanisms underlying human gene expression variation with RNA sequencing
Joseph K. Pickrell et al.
NATURE (2010)
PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock
Norihito Nakamichi et al.
PLANT CELL (2010)
Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression
Christopher Vollmers et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling
Arthur G. Hunt et al.
BMC GENOMICS (2008)
A Polyadenylation Factor Subunit Implicated in Regulating Oxidative Signaling in Arabidopsis thaliana
Jingxian Zhang et al.
PLOS ONE (2008)
The circadian clock regulates auxin signaling and responses in Arabidopsis
Michael F. Covington et al.
PLOS BIOLOGY (2007)
Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis
Alan J. Herr et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana
James C. W. Locke et al.
MOLECULAR SYSTEMS BIOLOGY (2006)
Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis
OE Bläsing et al.
PLANT CELL (2005)
Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures
JC Loke et al.
PLANT PHYSIOLOGY (2005)
Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock
EM Farré et al.
CURRENT BIOLOGY (2005)
DNA microarray analyses of circadian timing: The genomic basis of biological time
GE Duffield
JOURNAL OF NEUROENDOCRINOLOGY (2003)
Statistical issues with microarrays: processing and analysis
R Nadon et al.
TRENDS IN GENETICS (2002)
Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis
R Schaffer et al.
PLANT CELL (2001)
Orchestrated transcription of key pathways in Arabidopsis by the circadian clock
SL Harmer et al.
SCIENCE (2000)
Share Paper
