Related references
Note: Only part of the references are listed.BigDataProcessor2: a free and open-source Fiji plugin for inspection and processing of TB sized image data
Christian Tischer et al.
BIOINFORMATICS (2021)
Tissue clearing and its applications in neuroscience
Hiroki R. Ueda et al.
NATURE REVIEWS NEUROSCIENCE (2020)
Fast and accurate sCMOS noise correction for fluorescence microscopy
Biagio Mandracchia et al.
NATURE COMMUNICATIONS (2020)
MACS: Rapid Aqueous Clearing System for 3D Mapping of Intact Organs
Jingtan Zhu et al.
ADVANCED SCIENCE (2020)
Feature-rich covalent stains for super-resolution and cleared tissue fluorescence microscopy
Chenyi Mao et al.
SCIENCE ADVANCES (2020)
Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy
Hiroki R. Ueda et al.
NEURON (2020)
Biomedical Applications of Tissue Clearing and Three-Dimensional Imaging in Health and Disease
Maria Victoria Gomez-Gaviro et al.
ISCIENCE (2020)
A Comprehensive Integrated Anatomical and Molecular Atlas of Rat Intrinsic Cardiac Nervous System
Sirisha Achanta et al.
ISCIENCE (2020)
Deep learning-enabled efficient image restoration for 3D microscopy of turbid biological specimens
Le Xiao et al.
OPTICS EXPRESS (2020)
Viral tools for neuroscience
Alexander R. Nectow et al.
NATURE REVIEWS NEUROSCIENCE (2020)
Reconstruction of coronary circulation networks: A review of methods
Vibujithan Vigneshwaran et al.
MICROCIRCULATION (2019)
Identification of peripheral neural circuits that regulate heart rate using optogenetic and viral vector strategies
Pradeep S. Rajendran et al.
NATURE COMMUNICATIONS (2019)
Physiological Biomimetic Culture System for Pig and Human Heart Slices
Qinghui Ou et al.
CIRCULATION RESEARCH (2019)
Multi-immersion open-top light-sheet microscope for high-throughput imaging of cleared tissues
Adam K. Glaser et al.
NATURE COMMUNICATIONS (2019)
A comprehensive, multiscale framework for evaluation of arrhythmias arising from cell therapy in the whole post-myocardial infarcted heart
Joseph K. Yu et al.
SCIENTIFIC REPORTS (2019)
Modified CLARITY Achieving Faster and Better Intact Mouse Brain Clearing and Immunostaining
Hao Du et al.
SCIENTIFIC REPORTS (2019)
Properties of cardiac conduction in a cell-based computational model
Karoline Horgmo Jaeger et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
Exploiting Multi-Level Parallelism for Stitching Very Large Microscopy Images
Alessandro Bria et al.
FRONTIERS IN NEUROINFORMATICS (2019)
BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples
David Hoerl et al.
NATURE METHODS (2019)
Light-sheet microscopy of cleared tissues with isotropic, subcellular resolution
Tonmoy Chakraborty et al.
NATURE METHODS (2019)
Automatic Graph-Based Modeling of Brain Microvessels Captured With Two-Photon Microscopy
Rafat Damseh et al.
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS (2019)
Protection of tissue physicochemical properties using polyfunctional crosslinkers
Young-Gyun Park et al.
NATURE BIOTECHNOLOGY (2019)
Subvoxel light-sheet microscopy for high-resolution high-throughput volumetric imaging of large biomedical specimens
Peng Fei et al.
ADVANCED PHOTONICS (2019)
Viral Strategies for Targeting the Central and Peripheral Nervous Systems
Claire N. Bedbrook et al.
ANNUAL REVIEW OF NEUROSCIENCE, VOL 41 (2018)
Light sheet theta microscopy for rapid high-resolution imaging of large biological samples
Bianca Migliori et al.
BMC BIOLOGY (2018)
Tissue clearing of both hard and soft tissue organs with the PEGASOS method
Dian Jing et al.
CELL RESEARCH (2018)
Comparison and error estimation of 3D fibre orientation analysis of computed tomography image data for fibre reinforced composites
P. Pinter et al.
NDT & E INTERNATIONAL (2018)
Next generation histology methods for three-dimensional imaging of fresh and archival human brain tissues
Hei Ming Lai et al.
NATURE COMMUNICATIONS (2018)
Intensify3D: Normalizing signal intensity in large heterogenic image stacks
Nadav Yayon et al.
SCIENTIFIC REPORTS (2018)
Confocal Microscopy-Based Estimation of Parameters for Computational Modeling of Electrical Conduction in the Normal and Infarcted Heart
Joachim Greiner et al.
FRONTIERS IN PHYSIOLOGY (2018)
Hydrogel-Tissue Chemistry: Principles and Applications
Viviana Gradinaru et al.
ANNUAL REVIEW OF BIOPHYSICS, VOL 47 (2018)
CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation
Matthias G. Haberl et al.
NATURE METHODS (2018)
Multidirectional digital scanned light-sheet microscopy enables uniform fluorescence excitation and contrast-enhanced imaging
Adam K. Glaser et al.
SCIENTIFIC REPORTS (2018)
Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents
Kazuki Tainaka et al.
CELL REPORTS (2018)
Adaptive particle representation of fluorescence microscopy images
Bevan L. Cheeseman et al.
NATURE COMMUNICATIONS (2018)
Fully Automated Evaluation of Total Glomerular Number and Capillary Tuft Size in Nephritic Kidneys Using Lightsheet Microscopy
Anika Klingberg et al.
JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2017)
A beginner's guide to tissue clearing
Pablo Ariel
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2017)
Integrating machine learning with region-based active contour models in medical image segmentation
Agus Pratondo et al.
JOURNAL OF VISUAL COMMUNICATION AND IMAGE REPRESENTATION (2017)
DeconvolutionLab2: An open-source software for deconvolution microscopy
Daniel Sage et al.
METHODS (2017)
sCMOS noise-correction algorithm for microscopy images
Sheng Liu et al.
NATURE METHODS (2017)
Line scanning, stage scanning confocal microscope (LSSSCM)
Daniel S. Gareau et al.
BIOMEDICAL OPTICS EXPRESS (2017)
UbasM: An effective balanced optical clearing method for intact biomedical imaging
Lingling Chen et al.
SCIENTIFIC REPORTS (2017)
Increased collagen within the transverse tubules in human heart failure
David J. Crossman et al.
CARDIOVASCULAR RESEARCH (2017)
Chemical Principles in Tissue Clearing and Staining Protocols for Whole-Body Cell Profiling
Kazuki Tainaka et al.
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 32 (2016)
Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes
Nicolas Renier et al.
CELL (2016)
TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images
Alessandro Bria et al.
NATURE METHODS (2016)
A survey on skeletonization algorithms and their applications
Punam K. Saha et al.
PATTERN RECOGNITION LETTERS (2016)
Analysis of Microstructure of the Cardiac Conduction System Based on Three-Dimensional Confocal Microscopy
Daniel Romero et al.
PLOS ONE (2016)
3D imaging in CUBIC-cleared mouse heart tissue: going deeper
Imke Nehrhoff et al.
BIOMEDICAL OPTICS EXPRESS (2016)
Comment: The FAIR Guiding Principles for scientific data management and stewardship
Mark D. Wilkinson et al.
SCIENTIFIC DATA (2016)
Deconvolution-free Subcellular Imaging with Axially Swept Light Sheet Microscopy
Kevin M. Dean et al.
BIOPHYSICAL JOURNAL (2015)
Cardiac muscle organization revealed in 3-D by imaging whole-mount mouse hearts using two-photon fluorescence and confocal microscopy
Mayandi Sivaguru et al.
BIOTECHNIQUES (2015)
Simple, Scalable Proteomic Imaging for High-Dimensional Profiling of Intact Systems
Evan Murray et al.
CELL (2015)
Clarifying Tissue Clearing
Douglas S. Richardson et al.
CELL (2015)
CIDRE: an illumination-correction method for optical microscopy
Kevin Smith et al.
NATURE METHODS (2015)
BigDataViewer: visualization and processing for large image data sets
Tobias Pietzsch et al.
NATURE METHODS (2015)
Efficient processing and analysis of large-scale light-sheet microscopy data
Fernando Amat et al.
NATURE PROTOCOLS (2015)
Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping
Jennifer B. Treweek et al.
NATURE PROTOCOLS (2015)
Sodium channels in the Cx43 gap junction perinexus may constitute a cardiac ephapse: an experimental and modeling study
Rengasayee Veeraraghavan et al.
PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY (2015)
Stochastic electrotransport selectively enhances the transport of highly electromobile molecules
Sung-Yon Kim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Rapid imaging of large tissues using high-resolution stage-scanning microscopy
Tao Yang et al.
BIOMEDICAL OPTICS EXPRESS (2015)
Fast immuno-labeling by electrophoretically driven infiltration for intact tissue imaging
Jun Li et al.
SCIENTIFIC REPORTS (2015)
Optimization of CLARITY for Clearing Whole-Brain and Other Intact Organs
Jonathan R. Epp et al.
ENEURO (2015)
Microdomain Effects on Transverse Cardiac Propagation
Joyce Lin et al.
BIOPHYSICAL JOURNAL (2014)
Whole-Brain Imaging with Single-Cell Resolution Using Chemical Cocktails and Computational Analysis
Etsuo A. Susaki et al.
CELL (2014)
Single-Cell Phenotyping within Transparent Intact Tissue through Whole-Body Clearing
Bin Yang et al.
CELL (2014)
iDISCO: A Simple, RapidMethod to Immunolabel Large Tissue Samples for Volume Imaging
Nicolas Renier et al.
CELL (2014)
Whole-Body Imaging with Single-Cell Resolution by Tissue Decolorization
Kazuki Tainaka et al.
CELL (2014)
3D live fluorescence imaging of cellular dynamics using Bessel beam plane illumination microscopy
Liang Gao et al.
NATURE PROTOCOLS (2014)
Extensible visualization and analysis for multidimensional images using Vaa3D
Hanchuan Peng et al.
NATURE PROTOCOLS (2014)
Advanced CLARITY for rapid and high-resolution imaging of intact tissues
Raju Tomer et al.
NATURE PROTOCOLS (2014)
3D BrainCV: Simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution
Jingpeng Wu et al.
NEUROIMAGE (2014)
Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution
Bi-Chang Chen et al.
SCIENCE (2014)
Processing Stationary Noise: Model and Parameter Selection in Variational Methods
Jerome Fehrenbach et al.
SIAM JOURNAL ON IMAGING SCIENCES (2014)
ClearT: a detergent- and solvent-free clearing method for neuronal and non-neuronal tissue
Takaaki Kuwajima et al.
DEVELOPMENT (2013)
Experimental and analytical comparative study of optical coefficient of fresh and frozen rat tissues
Mohammed Mesradi et al.
JOURNAL OF BIOMEDICAL OPTICS (2013)
Structural and molecular interrogation of intact biological systems
Kwanghun Chung et al.
NATURE (2013)
Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms
Fang Huang et al.
NATURE METHODS (2013)
SeeDB: a simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction
Meng-Tsen Ke et al.
NATURE NEUROSCIENCE (2013)
Optical properties of biological tissues: a review
Steven L. Jacques
PHYSICS IN MEDICINE AND BIOLOGY (2013)
The performance of 2D array detectors for light sheet based fluorescence correlation spectroscopy
Anand Pratap Singh et al.
OPTICS EXPRESS (2013)
Progression of myocardial remodeling and mechanical dysfunction in the spontaneously hypertensive rat
Ian J. LeGrice et al.
AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY (2012)
The Multi-Scale Modelling of Coronary Blood Flow
Jack Lee et al.
ANNALS OF BIOMEDICAL ENGINEERING (2012)
TeraStitcher - A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
Alessandro Bria et al.
BMC BIOINFORMATICS (2012)
High-Resolution 3-Dimensional Reconstruction of the Infarct Border Zone Impact of Structural Remodeling on Electrical Activation
Sally L. Rutherford et al.
CIRCULATION RESEARCH (2012)
Variational Algorithms to Remove Stationary Noise: Applications to Microscopy Imaging
Jerome Fehrenbach et al.
IEEE TRANSACTIONS ON IMAGE PROCESSING (2012)
Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy
Raju Tomer et al.
NATURE METHODS (2012)
Three-dimensional imaging of solvent-cleared organs using 3DISCO
Ali Ertuerk et al.
NATURE PROTOCOLS (2012)
Correction: Chemical Clearing and Dehydration of GFP Expressing Mouse Brains
Klaus Becker et al.
PLoS One (2012)
Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination
Thomas A. Planchon et al.
NATURE METHODS (2011)
Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain
Hiroshi Hama et al.
NATURE NEUROSCIENCE (2011)
Incorporating Histology into a 3D Microscopic Computer Model of Myocardium to Study Propagation at a Cellular Level
Jeroen Stinstra et al.
ANNALS OF BIOMEDICAL ENGINEERING (2010)
FIVE GOOD REASONS TO USE THE HIERARCHICAL DATA FORMAT
Marc Poinot
COMPUTING IN SCIENCE & ENGINEERING (2010)
V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets
Hanchuan Peng et al.
NATURE BIOTECHNOLOGY (2010)
An efficient local Chan-Vese model for image segmentation
Xiao-Feng Wang et al.
PATTERN RECOGNITION (2010)
An open-source deconvolution software package for 3-D quantitative fluorescence microscopy imaging
Y. Sun et al.
JOURNAL OF MICROSCOPY (2009)
A guide to modelling cardiac electrical activity in anatomically detailed ventricles
R. H. Clayton et al.
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY (2008)
Automatic segmentation of 3D micro-CT coronary vascular images
Jack Lee et al.
MEDICAL IMAGE ANALYSIS (2007)
Laminar arrangement of ventricular myocytes influences electrical behavior of the heart
Darren A. Hooks et al.
CIRCULATION RESEARCH (2007)
High-speed confocal fluorescence imaging with a novel line scanning microscope
Ralf Wolleschensky et al.
JOURNAL OF BIOMEDICAL OPTICS (2006)
Deconvolution methods for 3-D fluorescence microscopy images
P Sarder et al.
IEEE SIGNAL PROCESSING MAGAZINE (2006)
Global left ventricular function in cardiac CT.: Evaluation of an automated 3D region-growing segmentation algorithm
G Mühlenbruch et al.
EUROPEAN RADIOLOGY (2006)
Deep tissue two-photon microscopy
F Helmchen et al.
NATURE METHODS (2005)
3-D quantification and visualization of vascular structures from confocal microscopic images using skeletonization and voxel-coding
H Soltanian-Zadeh et al.
COMPUTERS IN BIOLOGY AND MEDICINE (2005)
A finite volume method for modeling discontinuous electrical activation in cardiac tissue
M Trew et al.
ANNALS OF BIOMEDICAL ENGINEERING (2005)
STACS: New active contour scheme for cardiac MR image segmentation
C Plueimpitiwiriyawej et al.
IEEE TRANSACTIONS ON MEDICAL IMAGING (2005)
Two-photon microscopy of cells and tissue
M Rubart
CIRCULATION RESEARCH (2004)
Cardiac microstructure - Implications for electrical, propagation and defibrillation in the heart
DA Hooks et al.
CIRCULATION RESEARCH (2002)