4.8 Article

Directed evolution of orthogonal RNA-RBP pairs through library-vs-library in vitro selection

Related references

Note: Only part of the references are listed.
Article Chemistry, Multidisciplinary

Large Phenotypic Enhancement of Structured Random RNA Pools

Fabio Chizzolini et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2020)

Article Biochemical Research Methods

Orthogonal Protein-Responsive mRNA Switches for Mammalian Synthetic Biology

Hiroki Ono et al.

ACS SYNTHETIC BIOLOGY (2020)

Article Biochemical Research Methods

Cell-Free Protein Synthesis as a Prototyping Platform for Mammalian Synthetic Biology

Margarita B. Kopniczky et al.

ACS SYNTHETIC BIOLOGY (2020)

Article Chemistry, Multidisciplinary

Combining Phage Display and Next-Generation Sequencing for Materials Sciences: A Case Study on Probing Polypropylene Surfaces

Carmen Juds et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2020)

Review Biochemical Research Methods

RNA and protein-based nanodevices for mammalian post-transcriptional circuits

Shunsuke Kawasaki et al.

CURRENT OPINION IN BIOTECHNOLOGY (2020)

Article Biology

How to measure and evaluate binding affinities

Inga Jarmoskaite et al.

ELIFE (2020)

Article Biochemistry & Molecular Biology

Directed co-evolution of interacting protein peptide pairs by compartmentalized two-hybrid replication (C2HR)

Jia Wei Siau et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Multidisciplinary Sciences

RNA-protein interaction mapping via MS2-or Cas13-based APEX targeting

Shuo Han et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

Staufen2-mediated RNA recognition and localization requires combinatorial action of multiple domains

Simone Heber et al.

NATURE COMMUNICATIONS (2019)

Article Chemistry, Multidisciplinary

Programmable Artificial Cells Using Histamine-Responsive Synthetic Riboswitch

Mohammed Dwidar et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2019)

Article Multidisciplinary Sciences

Engineering orthogonal signalling pathways reveals the sparse occupancy of sequence space

Conor J. McClune et al.

NATURE (2019)

Article Biochemistry & Molecular Biology

Synthetic switch to minimize CRISPR off-target effects by self-restricting Cas9 transcription and translation

Chih-Che Shen et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemical Research Methods

An improved MS2 system for accurate reporting of the mRNA life cycle

Evelina Tutucci et al.

NATURE METHODS (2018)

Article Biochemistry & Molecular Biology

Efficient mRNA delivery system utilizing chimeric VSVG-L7Ae virus-like particles

Yulia Zhitnyuk et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2018)

Article Biochemistry & Molecular Biology

Small-molecule-based regulation of RNA-delivered circuits in mammalian cells

Tyler E. Wagner et al.

NATURE CHEMICAL BIOLOGY (2018)

Article Chemistry, Multidisciplinary

Discovery of a Covalent Kinase Inhibitor from a DNA-Encoded Small Molecule Library x Protein Library Selection

Alix I. Chang et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2017)

Article Multidisciplinary Sciences

High-throughput characterization of protein-protein interactions by reprogramming yeast mating

David Younger et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Microbiology

RIP-Seq Suggests Translational Regulation by L7Ae in Archaea

Michael Daume et al.

Article Multidisciplinary Sciences

Rationally designed mineralization for selective recovery of the rare earth elements

Takaaki Hatanaka et al.

NATURE COMMUNICATIONS (2017)

Article Nanoscience & Nanotechnology

Monovalent Strep-Tactin for strong and site-specific tethering in nanospectroscopy

Fabian Baumann et al.

NATURE NANOTECHNOLOGY (2016)

Article Biochemistry & Molecular Biology

An Evolved RNA Recognition Motif That Suppresses HIV-1 Tat/TAR-Dependent Transcription

David W. Crawford et al.

ACS CHEMICAL BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Engineering Complex Synthetic Transcriptional Programs with CRISPR RNA Scaffolds

Jesse G. Zalatan et al.

Article Multidisciplinary Sciences

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex

Silvana Konermann et al.

NATURE (2015)

Article Biotechnology & Applied Microbiology

Mammalian synthetic circuits with RNA binding proteins for RNA-only delivery

Liliana Wroblewska et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemical Research Methods

Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display

David M. Shechner et al.

NATURE METHODS (2015)

Article Biochemistry & Molecular Biology

Synthetic RNA Recognition Motifs That Selectively Recognize HIV-1 Trans-Activation Response Element Hairpin RNA

Brett D. Blakeley et al.

ACS CHEMICAL BIOLOGY (2014)

Review Biochemistry & Molecular Biology

The K-turn motif in riboswitches and other RNA species

David M. J. Lilley

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2014)

Article Chemistry, Multidisciplinary

Identification of Ligand-Target Pairs from Combined Libraries of Small Molecules and Unpurified Protein Targets in Cell Lysates

Lynn M. McGregor et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)

Article Multidisciplinary Sciences

Multiplex single-molecule interaction profiling of DNA-barcoded proteins

Liangcai Gu et al.

NATURE (2014)

Article Biochemical Research Methods

A general design strategy for protein-responsive riboswitches in mammalian cells

Simon Auslaender et al.

NATURE METHODS (2014)

Article Biochemistry & Molecular Biology

Prospective identification of parasitic sequences in phage display screens

Wadim L. Matochko et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Protein-responsive ribozyme switches in eukaryotic cells

Andrew B. Kennedy et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Chemistry, Multidisciplinary

Directed evolution of a synthetic RNA-protein module to create a new translational switch

Tomoaki Hara et al.

CHEMICAL COMMUNICATIONS (2013)

Article Biochemistry & Molecular Biology

Quantitative and simultaneous translational control of distinct mammalian mRNAs

Kei Endo et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

The dataset for protein-RNA binding affinity

Xiufeng Yang et al.

PROTEIN SCIENCE (2013)

Article Biochemistry & Molecular Biology

The molecular recognition of kink-turn structure by the L7Ae class of proteins

Lin Huang et al.

Article Multidisciplinary Sciences

A versatile cis-acting inverter module for synthetic translational switches

Kei Endo et al.

NATURE COMMUNICATIONS (2013)

Article Multidisciplinary Sciences

Programmable single-cell mammalian biocomputers

Simon Auslaender et al.

NATURE (2012)

Article Multidisciplinary Sciences

Identifying the preferred RNA motifs and chemotypes that interact by probing millions of combinations

Tuan Tran et al.

NATURE COMMUNICATIONS (2012)

Article Biochemical Research Methods

Feedback Control of Protein Expression in Mammalian Cells by Tunable Synthetic Translational Inhibition

James A. Stapleton et al.

ACS SYNTHETIC BIOLOGY (2012)

Article Chemistry, Multidisciplinary

NUPACK: Analysis and Design of Nucleic Acid Systems

Joseph N. Zadeh et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2011)

Article Biochemical Research Methods

Next-generation sequencing to generate interactome datasets

Haiyuan Yu et al.

NATURE METHODS (2011)

Article Multidisciplinary Sciences

Synthetic human cell fate regulation by protein-driven RNA switches

Hirohide Saito et al.

NATURE COMMUNICATIONS (2011)

Article Multidisciplinary Sciences

In vivo imaging of labelled endogenous β-actin mRNA during nucleocytoplasmic transport

David Grunwald et al.

NATURE (2010)

Article Biochemistry & Molecular Biology

Synthetic translational regulation by an L7Ae-kink-turn RNP switch

Hirohide Saito et al.

NATURE CHEMICAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

In vivo expression and purification of aptamer-tagged small RNA regulators

Nelly Said et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Libraries against libraries for combinatorial selection of replicating antigen-antibody pairs

Diana R. Bowley et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

The importance of G • A hydrogen bonding in the metal ion- and protein-induced folding of a kink turn RNA

Ben Turner et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Biotechnology & Applied Microbiology

Trinucleotide cassettes increase diversity of T7 phage-displayed peptide library

Lauren Rh Krumpe et al.

BMC BIOTECHNOLOGY (2007)

Article Biochemistry & Molecular Biology

OligoCalc: an online oligonucleotide properties calculator

Warren A. Kibbe

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemical Research Methods

The Strep-tag system for one-step purification and high-affinity detection or capturing of proteins

Thomas G. M. Schmidt et al.

NATURE PROTOCOLS (2007)

Article Chemistry, Multidisciplinary

UCSF chimera - A visualization system for exploratory research and analysis

EF Pettersen et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Article Biochemical Research Methods

Kinetic studies of RNA-protein interactions using surface plasmon resonance

PS Katsamba et al.

METHODS (2002)

Article Multidisciplinary Sciences

T7 phage display: A novel genetic selection system for cloning RNA-binding proteins from cDNA libraries

S Danner et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Review Biotechnology & Applied Microbiology

Applications of display technology in protein analysis

M Li

NATURE BIOTECHNOLOGY (2000)

Article Biochemistry & Molecular Biology

A heterodimeric coiled-coil peptide pair selected in vivo from a designed library-versus-library ensemble

KM Arndt et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)