Related references
Note: Only part of the references are listed.Multimodal fusion of structural and functional brain imaging in depression using linked independent component analysis
Luigi A. Maglanoc et al.
HUMAN BRAIN MAPPING (2020)
Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature
Christoph Kirst et al.
CELL (2020)
The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas
Quanxin Wang et al.
CELL (2020)
MACS: Rapid Aqueous Clearing System for 3D Mapping of Intact Organs
Jingtan Zhu et al.
ADVANCED SCIENCE (2020)
Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex
Yazan N. Billeh et al.
NEURON (2020)
Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy
Hiroki R. Ueda et al.
NEURON (2020)
Extraction of Distinct Neuronal Cell Types from within a Genetically Continuous Population
Euiseok J. Kim et al.
NEURON (2020)
BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals
Longwen Huang et al.
CELL (2020)
Molecular atlas of the adult mouse brain
Cantin Ortiz et al.
SCIENCE ADVANCES (2020)
Behavioral state coding by molecularly defined paraventricular hypothalamic cell type ensembles
Shengjin Xu et al.
SCIENCE (2020)
Light sheet fluorescence microscopy for neuroscience
Stella Corsetti et al.
JOURNAL OF NEUROSCIENCE METHODS (2019)
A whole-brain atlas of monosynaptic input targeting four different cell types in the medial prefrontal cortex of the mouse
Sofie Ahrlund-Richter et al.
NATURE NEUROSCIENCE (2019)
Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution
Samuel G. Rodriques et al.
SCIENCE (2019)
Biologically Realistic Mean-Field Models of Conductance-Based Networks of Spiking Neurons with Adaptation
Matteo di Volo et al.
NEURAL COMPUTATION (2019)
Synchronization dependent on spatial structures of a mesoscopic whole-brain network
Hannah Choi et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
Classification of electrophysiological and morphological neuron types in the mouse visual cortex
Nathan W. Gouwens et al.
NATURE NEUROSCIENCE (2019)
Inter-individual differences in human brain structure and morphology link to variation in demographics and behavior
Alberto Llera et al.
ELIFE (2019)
Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain
Johan Winnubst et al.
CELL (2019)
Two dimensional CCA via penalized matrix decomposition for structure preserved fMRI data analysis
Muhammad Ali Qadar et al.
DIGITAL SIGNAL PROCESSING (2019)
High-definition spatial transcriptomics for in situ tissue profiling
Sanja Vickovic et al.
NATURE METHODS (2019)
High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing
Xiaoyin Chen et al.
CELL (2019)
Hierarchical organization of cortical and thalamic connectivity
Julie A. Harris et al.
NATURE (2019)
A null model of the mouse whole-neocortex micro-connectome
Michael W. Reimann et al.
NATURE COMMUNICATIONS (2019)
Enhanced and unified anatomical labeling for a common mouse brain atlas
Uree Chon et al.
NATURE COMMUNICATIONS (2019)
Cell-type-specific metabolic labeling, detection and identification of nascent proteomes in vivo
Beatriz Alvarez-Castelao et al.
NATURE PROTOCOLS (2019)
Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution
Ruixuan Gao et al.
SCIENCE (2019)
Individual structural features constrain the mouse functional connectome
Francesca Melozzi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
FDISCO: Advanced solvent-based clearing method for imaging whole organs
Yisong Qi et al.
SCIENCE ADVANCES (2019)
An interactive framework for whole-brain maps at cellular resolution
Daniel Furth et al.
NATURE NEUROSCIENCE (2018)
Single cell transcriptomics in neuroscience: cell classification and beyond
Bosiljka Tasic
CURRENT OPINION IN NEUROBIOLOGY (2018)
Deep Coupling Autoencoder for Fault Diagnosis With Multimodal Sensory Data
Meng Ma et al.
IEEE TRANSACTIONS ON INDUSTRIAL INFORMATICS (2018)
The Mouse Cortical Connectome, Characterized by an Ultra-Dense Cortical Graph, Maintains Specificity by Distinct Connectivity Profiles
Razvan Gamanut et al.
NEURON (2018)
Variation in Activity State, Axonal Projection, and Position Define the Transcriptional Identity of Individual Neocortical Projection Neurons
Maxime Chevee et al.
CELL REPORTS (2018)
The logic of single-cell projections from visual cortex
Yunyun Han et al.
NATURE (2018)
Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents
Kazuki Tainaka et al.
CELL REPORTS (2018)
Shared and distinct transcriptomic cell types across neocortical areas
Bosiljka Tasic et al.
NATURE (2018)
A Cell Atlas for the Mouse Brain
Csaba Eroe et al.
FRONTIERS IN NEUROINFORMATICS (2018)
Regional Diversity in the Postsynaptic Proteome of the Mouse Brain
Marcia Roy et al.
PROTEOMES (2018)
Quantitative 3D Ultrastructure of Thalamocortical Synapses from the Lemniscal Ventral Posteromedial Nucleus in Mouse Barrel Cortex
Javier Rodriguez-Moreno et al.
CEREBRAL CORTEX (2018)
Statistical Performance Analysis of Data-Driven Neural Models
Dean R. Freestone et al.
INTERNATIONAL JOURNAL OF NEURAL SYSTEMS (2017)
Structural Basis of Large-Scale Functional Connectivity in the Mouse
Joanes Grandjean et al.
JOURNAL OF NEUROSCIENCE (2017)
Refinement by integration: aggregated effects of multimodal imaging markers on adult ADHD
Thomas Wolfers et al.
JOURNAL OF PSYCHIATRY & NEUROSCIENCE (2017)
Variational Inference: A Review for Statisticians
David M. Blei et al.
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2017)
Generative models for network neuroscience: prospects and promise
Richard F. Betzel et al.
JOURNAL OF THE ROYAL SOCIETY INTERFACE (2017)
Rich cell-type-specific network topology in neocortical microcircuitry
Eyal Gal et al.
NATURE NEUROSCIENCE (2017)
The use of brain organoids to investigate neural development and disease
Elizabeth Di Lullo et al.
NATURE REVIEWS NEUROSCIENCE (2017)
AAV-Mediated Anterograde Transsynaptic Tagging: Mapping Corticocollicular Input-Defined Neural Pathways for Defense Behaviors
Brian Zingg et al.
NEURON (2017)
Using high-throughput barcode sequencing to efficiently map connectomes
Ian D. Peikon et al.
NUCLEIC ACIDS RESEARCH (2017)
Comprehensive single-cell transcriptional profiling of a multicellular organism
Junyue Cao et al.
SCIENCE (2017)
Correction: The missing link: Predicting connectomes from noisy and partially observed tract tracing data
Max Hinne et al.
PLoS Computational Biology (2017)
Discover mouse gene coexpression landscapes using dictionary learning and sparse coding
Yujie Li et al.
BRAIN STRUCTURE & FUNCTION (2017)
Cross-Laboratory Analysis of Brain Cell Type Transcriptomes with Applications to Interpretation of Bulk Tissue Data
B. Ogan Mancarci et al.
ENEURO (2017)
Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism
Yongsoo Kim et al.
CELL (2017)
Multisensor Feature Fusion for Bearing Fault Diagnosis Using Sparse Autoencoder and Deep Belief Network
Zhuyun Chen et al.
IEEE TRANSACTIONS ON INSTRUMENTATION AND MEASUREMENT (2017)
The Virtual Mouse Brain: A Computational Neuroinformatics Platform to Study Whole Mouse Brain Dynamics
Francesca Melozzi et al.
ENEURO (2017)
Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq
Cathryn R. Cadwell et al.
NATURE BIOTECHNOLOGY (2016)
From Cajal to Connectome and Beyond
Larry W. Swanson et al.
ANNUAL REVIEW OF NEUROSCIENCE, VOL 39 (2016)
Multiplexed Intact-Tissue Transcriptional Analysis at Cellular Resolution
Emily Lauren Sylwestrak et al.
CELL (2016)
Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes
Nicolas Renier et al.
CELL (2016)
Shrinkage-mediated imaging of entire organs and organisms using uDISCO
Chenchen Pan et al.
NATURE METHODS (2016)
Disentangling neural cell diversity using single-cell transcriptomics
Jean-Francois Poulin et al.
NATURE NEUROSCIENCE (2016)
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
Bosiljka Tasic et al.
NATURE NEUROSCIENCE (2016)
High-Throughput Mapping of Single-Neuron Projections by Sequencing of Barcoded RNA
Justus M. Kebschull et al.
NEURON (2016)
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
Patrik L. Stahl et al.
SCIENCE (2016)
Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons
Naomi Habib et al.
SCIENCE (2016)
A Simple and Efficient In Vivo Non-viral RNA Transfection Method for Labeling the Whole Axonal Tree of Individual Adult Long-Range Projection Neurons
Cesar Porrero et al.
FRONTIERS IN NEUROANATOMY (2016)
Statistical Analysis of Tract-Tracing Experiments Demonstrates a Dense, Complex Cortical Network in the Mouse
Rolf J. F. Ypma et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
A platform for brain-wide imaging and reconstruction of individual neurons
Michael N. Economon et al.
ELIFE (2016)
A Diffusion MRI Tractography Connectome of the Mouse Brain and Comparison with Neuronal Tracer Data
Evan Calabrese et al.
CEREBRAL CORTEX (2015)
Data Fusion by Matrix Factorization
Marinka Zitnik et al.
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2015)
The Technology and Biology of Single-Cell RNA Sequencing
Aleksandra A. Kolodziejczyk et al.
MOLECULAR CELL (2015)
Spatial reconstruction of single-cell gene expression data
Rahul Satija et al.
NATURE BIOTECHNOLOGY (2015)
Functional connectivity dynamics: Modeling the switching behavior of the resting state
Enrique C. A. Hansen et al.
NEUROIMAGE (2015)
A National Network of Neurotechnology Centers for the BRAIN Initiative
A. Paul Alivisatos et al.
NEURON (2015)
Organization and Evolution of Brain Lipidome Revealed by Large-Scale Analysis of Human, Chimpanzee, Macaque, and Mouse Tissues
Katarzyna Bozek et al.
NEURON (2015)
Diffusion MRI and its Role in Neuropsychology
Bryon A. Mueller et al.
NEUROPSYCHOLOGY REVIEW (2015)
The BRAIN Initiative: developing technology to catalyse neuroscience discovery
Lyric A. Jorgenson et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)
Spatially resolved, highly multiplexed RNA profiling in single cells
Kok Hao Chen et al.
SCIENCE (2015)
A multiscale approach for the reconstruction of the fiber architecture of the human brain based on 3D-PLI
Julia Reckfort et al.
FRONTIERS IN NEUROANATOMY (2015)
Inter-individual stereotypy of the Platynereis larval visual connectome
Nadine Randel et al.
ELIFE (2015)
Linked alterations in gray and white matter morphology in adults with high-functioning autism spectrum disorder: A multimodal brain imaging study
Takashi Itahashi et al.
NEUROIMAGE-CLINICAL (2015)
iDISCO: A Simple, RapidMethod to Immunolabel Large Tissue Samples for Volume Imaging
Nicolas Renier et al.
CELL (2014)
Neural Networks of the Mouse Neocortex
Brian Zingg et al.
CELL (2014)
A mesoscale connectome of the mouse brain
Seung Wook Oh et al.
NATURE (2014)
Advanced CLARITY for rapid and high-resolution imaging of intact tissues
Raju Tomer et al.
NATURE PROTOCOLS (2014)
Group-PCA for very large fMRI datasets
Stephen M. Smith et al.
NEUROIMAGE (2014)
Structurally-informed Bayesian functional connectivity analysis
Max Hinne et al.
NEUROIMAGE (2014)
Integrative analysis of the connectivity and gene expression atlases in the mouse brain
Shuiwang Ji et al.
NEUROIMAGE (2014)
Cell-type-based model explaining coexpression patterns of genes in the brain
Pascal Grange et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation
Julie A. Harris et al.
FRONTIERS IN NEURAL CIRCUITS (2014)
Integrating neuroinformatics tools in The Virtual Brain
M. Marmaduke Woodman et al.
FRONTIERS IN NEUROINFORMATICS (2014)
Nanotools for Neuroscience and Brain Activity Mapping
A. Paul Alivisatos et al.
ACS NANO (2013)
The Pattern of Diffusion Parameter Changes in Alzheimer's Disease, Identified by Means of Linked Independent Component Analysis
Zsigmond Tamas Kincses et al.
JOURNAL OF ALZHEIMERS DISEASE (2013)
Structural and molecular interrogation of intact biological systems
Kwanghun Chung et al.
NATURE (2013)
Cellular-resolution connectomics: challenges of dense neural circuit reconstruction
Moritz Helmstaedter
NATURE METHODS (2013)
Single-cell sequencing-based technologies will revolutionize whole-organism science
Ehud Shapiro et al.
NATURE REVIEWS GENETICS (2013)
The Virtual Brain: a simulator of primate brain network dynamics
Paula Sanz Leon et al.
FRONTIERS IN NEUROINFORMATICS (2013)
The Virtual Brain Integrates Computational Modeling and Multimodal Neuroimaging
Petra Ritter et al.
BRAIN CONNECTIVITY (2013)
Using computational models to relate structural and functional brain connectivity
Jaroslav Hlinka et al.
EUROPEAN JOURNAL OF NEUROSCIENCE (2012)
High-resolution gene expression atlases for adult and developing mouse brain and spinal cord
Alex M. Henry et al.
MAMMALIAN GENOME (2012)
Statistical connectivity provides a sufficient foundation for specific functional connectivity in neocortical neural microcircuits
Sean L. Hill et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The Development and Application of Optogenetics
Lief Fenno et al.
ANNUAL REVIEW OF NEUROSCIENCE, VOL 34 (2011)
Updated Neuronal Scaling Rules for the Brains of Glires (Rodents/Lagomorphs)
Suzana Herculano-Houzel et al.
BRAIN BEHAVIOR AND EVOLUTION (2011)
Development and Evolution of the Human Neocortex
Jan H. Lui et al.
CELL (2011)
Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution
Ann-Shyn Chiang et al.
CURRENT BIOLOGY (2011)
A half century of experimental neuroanatomical tracing
Jose L. Lanciego et al.
JOURNAL OF CHEMICAL NEUROANATOMY (2011)
Spatio-temporal transcriptome of the human brain
Hyo Jung Kang et al.
NATURE (2011)
A novel approach to the human connectome: Ultra-high resolution mapping of fiber tracts in the brain
Markus Axer et al.
NEUROIMAGE (2011)
Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom
Pierre Fillard et al.
NEUROIMAGE (2011)
Linked independent component analysis for multimodal data fusion
Adrian R. Groves et al.
NEUROIMAGE (2011)
A Quantitative Comparison of Cell-Type-Specific Microarray Gene Expression Profiling Methods in the Mouse Brain
Benjamin W. Okaty et al.
PLOS ONE (2011)
Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells
Bo Huang et al.
CELL (2010)
Micro-Optical Sectioning Tomography to Obtain a High-Resolution Atlas of the Mouse Brain
Anan Li et al.
SCIENCE (2010)
Biclustering in data mining
Stanislav Busygin et al.
COMPUTERS & OPERATIONS RESEARCH (2008)
Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling
Graham Knott et al.
JOURNAL OF NEUROSCIENCE (2008)
Fast unfolding of communities in large networks
Vincent D. Blondel et al.
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2008)
Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
Rudolf Amann et al.
NATURE REVIEWS MICROBIOLOGY (2008)
The alpha-herpesviruses: molecular pathfinders in nervous system circuits
Mats I. Ekstrand et al.
TRENDS IN MOLECULAR MEDICINE (2008)
NeuroMorpho.Org: A central resource for neuronal morphologies
Giorgio A. Ascoli et al.
JOURNAL OF NEUROSCIENCE (2007)
Ultramicroscopy:: three-dimensional visualization of neuronal networks in the whole mouse brain
Hans-Ulrich Dodt et al.
NATURE METHODS (2007)
Enrichment or depletion of a GO category within a class of genes: which test?
Isabelle Rivals et al.
BIOINFORMATICS (2007)
Genome-wide atlas of gene expression in the adult mouse brain
Ed S. Lein et al.
NATURE (2007)
Retrograde neuronal tracing with a deletion-mutant rabies virus
Ian R. Wickersham et al.
NATURE METHODS (2007)
A systematic comparison and evaluation of biclustering methods for gene expression data
A Prelic et al.
BIOINFORMATICS (2006)
A recurrent network mechanism of time integration in perceptual decisions
KF Wong et al.
JOURNAL OF NEUROSCIENCE (2006)
Method for Multimodal analysis of independent source differences in schizophrenia: Combining gray matter structural and auditory oddball functional data
VD Calhoun et al.
HUMAN BRAIN MAPPING (2006)
Tensorial extensions of independent component analysis for multisubject FMRI analysis
CF Beckmann et al.
NEUROIMAGE (2005)
The human connectome: A structural description of the human brain
O Sporns et al.
PLOS COMPUTATIONAL BIOLOGY (2005)
Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure
W Denk et al.
PLOS BIOLOGY (2004)
Interneurons of the neocortical inhibitory system
H Markram et al.
NATURE REVIEWS NEUROSCIENCE (2004)
Virus-assisted mapping of neural inputs to a feeding center in the hypothalamus
J DeFalco et al.
SCIENCE (2001)
Retrograde and anterograde tracing combined with transmitter identification and electron microscopy
T Deller et al.
JOURNAL OF NEUROSCIENCE METHODS (2000)
Normalized cuts and image segmentation
JB Shi et al.
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2000)