4.8 Article

Broad sarbecovirus neutralization by a human monoclonal antibody

Journal

NATURE
Volume 597, Issue 7874, Pages 103-+

Publisher

NATURE PORTFOLIO
DOI: 10.1038/s41586-021-03817-4

Keywords

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Funding

  1. National Institute of General Medical Sciences [R01GM120553]
  2. National Institute of Allergy and Infectious Diseases [DP1AI158186, HHSN272201700059C, R01AI141707]
  3. Pew Biomedical Scholars Award
  4. Investigators in the Pathogenesis of Infectious Disease Awards from the Burroughs Wellcome Fund
  5. Fast Grants
  6. Pasteur Institute
  7. Damon Runyon Cancer Research Foundation
  8. University of Washington Arnold and Mabel Beckman cryo-EM centre
  9. US Department of Energy, Office of Science, Office of Basic Energy Sciences [DE-AC02-76SF00515]
  10. DOE Office of Biological and Environmental Research
  11. National Institutes of Health, National Institute of General Medical Sciences [P30GM133894]

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The emergence of SARS-CoV-2 variants and recurrent spillovers of coronaviruses into the human population emphasize the need for broadly neutralizing antibodies to prevent future zoonotic infections. The human monoclonal antibody S2X259 has shown promising results in neutralizing various forms of SARS-CoV-2 and potentially zoonotic sarbecoviruses by inhibiting the binding of ACE2 to the receptor-binding domain. This antibody targets a key antigenic site and may guide the design of vaccines effective against all sarbecoviruses.
The recent emergence of SARS-CoV-2 variants of concern(1-10) and the recurrent spillovers of coronaviruses(11,12) into the human population highlight the need for broadly neutralizing antibodies that are not affected by the ongoing antigenic drift and that can prevent or treat future zoonotic infections. Here we describe a human monoclonal antibody designated S2X259, which recognizes a highly conserved cryptic epitope of the receptor-binding domain and cross-reacts with spikes from all clades of sarbecovirus. S2X259 broadly neutralizes spike-mediated cell entry of SARS-CoV-2, including variants of concern (B.1.1.7, B.1.351, P.1, and B.1.427/B.1.429), as well as a wide spectrum of human and potentially zoonotic sarbecoviruses through inhibition of angiotensin-converting enzyme 2 (ACE2) binding to the receptor-binding domain. Furthermore, deep-mutational scanning and in vitro escape selection experiments demonstrate that S2X259 possesses an escape profile that is limited to a single substitution, G504D. We show that prophylactic and therapeutic administration of S2X259 protects Syrian hamsters (Mesocricetus auratus) against challenge with the prototypic SARS-CoV-2 and the B.1.351 variant of concern, which suggests that this monoclonal antibody is a promising candidate for the prevention and treatment of emergent variants and zoonotic infections. Our data reveal a key antigenic site that is targeted by broadly neutralizing antibodies and will guide the design of vaccines that are effective against all sarbecoviruses.

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